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[181620_at] 7TM chemoreceptor, srt family

Description B0238.5 /REP_DB=WormBase Gene ID /WP=CE07695 /TR=O16492 /GB=AAB65982.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 0      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 10.6
(-3)
A 		35.8
(-0.2)
A 		64.1
(3)
A 		59
(2.4)
A 		54
B 80
(1.6)
A 		20.8
(-3)
A 		30.3
(-2.3)
A 		97.6
(3)
A 		77
C 33.3
(-1.8)
A 		16.8
(-3)
A 		24
(-2.5)
A 		100.9
(3)
P 		84
avr 41.3
(-1.4) 		24.5
(-3) 		39.5
(-1.5) 		85.8
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 24.3
(-2.6)
A 		51.9
(1.2)
A 		51.4
(1.1)
A 		21.4
(-3)
A 		63.5
(2.8)
A 		65.1
(3)
A 		44
B 65.8
(3)
A 		13.7
(-2.6)
A 		10.4
(-3)
A 		61
(2.5)
A 		60.1
(2.4)
A 		46.5
(0.9)
A 		55
C 23.8
(-1.2)
A 		45
(0.5)
A 		10.4
(-2.3)
A 		74.7
(3)
A 		2.5
(-3)
A 		32.5
(-0.5)
P 		72
avr 38
(-0.1) 		36.9
(-0.3) 		24.1
(-3) 		52.4
(3) 		42
(0.8) 		48
(2.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 3.9
(-3)
A 		7.8
(-1.2)
A 		16.8
(3)
A 		8.6
(-0.8)
A 		13
B 25.5
(3)
A 		5.1
(-3)
A 		7
(-2.4)
A 		20.8
(1.6)
A 		20
C 11
(0)
A 		4.8
(-3)
A 		8.4
(-1.2)
A 		17
(3)
P 		12
avr 13.5
(1.8) 		5.9
(-3) 		10.7
(-0) 		15.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4.5
(-3)
A 		18.4
(2.7)
A 		11.2
(-0.3)
A 		5.4
(-2.6)
A 		19.2
(3)
A 		15.9
(1.7)
A 		15
B 22.9
(2.6)
A 		4.6
(-2.4)
A 		2.5
(-3)
A 		16.2
(0.8)
A 		24.4
(3)
A 		17.3
(1.1)
A 		22
C 8.8
(0.4)
A 		13.7
(2.5)
A 		2.6
(-2.2)
A 		15
(3)
A 		0.8
(-3)
A 		10.9
(1.3)
P 		14
avr 12.1
(1.3) 		12.2
(1.3) 		5.4
(-3) 		12.2
(1.3) 		14.8
(3) 		14.7
(2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181620_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11892
Sequence Type Exemplar sequence
Representative Public ID B0238.5 NCBI
Target Description B0238.5 /REP_DB=WormBase Gene ID /WP=CE07695 /TR=O16492 /GB=AAB65982.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072004 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-67) (srt-67) mRNA, complete cds. 11/11 None
GENEFINDER00000038885 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5255954:5257235:-1 11/11 None
B0238.5 ENSEMBL cdna:known chromosome:CEL140:V:5255954:5257235:-1 gene:B0238.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5255953-5257235(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-67
Ensembl B0238.5
Entrez Gene 181869 Entrez gene
SwissProt O16492 EMBL-EBI
WormBase CE07695 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65982 Serpentine receptor, class t protein 67 [Caenorhabditis elegans] ref|NP_504405.1| Serpentine Receptor, class T family member (srt-67) [Caenorhabditis elegans] 1.0E-175
blast CAE62645 Hypothetical protein CBG06780 [Caenorhabditis briggsae] 1.0E-85
blast AAB65984 Serpentine receptor, class t protein 68 [Caenorhabditis elegans] ref|NP_504403.2| Serpentine Receptor, class T family member (srt-68) [Caenorhabditis elegans] 5.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.9E-91
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504405.1 7 18-40,61-83,103-125,138-160,180-202,222-244,259-281
B0238.5 7 18-40,61-83,103-125,138-160,180-202,222-244,259-281
GENEFINDER00000038885 7 18-40,61-83,103-125,138-160,180-202,222-244,259-281
Sequence
Target Sequence 
>C. ELEGANS:181620_AT
atgatggctctcttagcgatctgccgagttttaatttttgccaactcaatggaaattcgt
ataactcctttagtagtgaaaatgatagtggtttgcattgtatgttgggttctattcgta
ttcattgctggttgtataactcaaaacttaatgttttcaccgccaagttggggatatgat
ttcagtgttccatatgcagaactgtttgatatgctcgaaatatttttaacagttccgtgc
ttggcgatatcttatttcgcctacctcactataatttttctgatttgctctaaaagaaat
cgaaacggcagtaatcaatcgaggaaaaatgaaatacggattctcattcagtcgacattt
gtaaccacatacatggcatgcctagtggttgtatggcatccagttatctttacaatggtt
tcttttattgatatgactaaatttagaaacatagcaattgcaaatggtttttggattctg
cacagctactgtcatccaattatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATGGCTCTCTTAGCGATCTGCC 78 47 337 Antisense
GCGATCTGCCGAGTTTTAATTTTTG 24 291 352 Antisense
GGGTTCTATTCGTATTCATTGCTGG 100 497 443 Antisense
TAATGTTTTCACCGCCAAGTTGGGG 504 635 485 Antisense
ACAGTTCCGTGCTTGGCGATATCTT 564 107 565 Antisense
GCGATATCTTATTTCGCCTACCTCA 673 289 580 Antisense
CGCCTACCTCACTATAATTTTTCTG 32 257 594 Antisense
ATACGGATTCTCATTCAGTCGACAT 656 23 670 Antisense
TATGGCATCCAGTTATCTTTACAAT 454 655 728 Antisense
TGGTTTTTGGATTCTGCACAGCTAC 608 551 801 Antisense
GCACAGCTACTGTCATCCAATTATT 225 317 816 Antisense
Sequence Source Affymetrix Proprietary Database