[Home] | [Total List]

[181619_at]

Description Y47H9C.9 /REP_DB=WormBase Gene ID /WP=CE20269 /TR=Q9XWD9 /GB=CAA21736.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 4
(-2.7)
A 		26.7
(3)
A 		2.7
(-3)
A 		11.6
(-0.8)
A 		24
B 4.6
(-2.5)
A 		31.1
(3)
A 		2.2
(-3)
A 		24.6
(1.7)
A 		29
C 2.8
(-3)
A 		6.5
(-2)
A 		7.4
(-1.7)
A 		24.3
(3)
A 		22
avr 3.8
(-3) 		21.4
(3) 		4.1
(-2.9) 		20.2
(2.6) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6
(1.3)
A 		7.1
(3)
A 		6.9
(2.7)
A 		3.3
(-3)
A 		5.7
(0.8)
A 		6.2
(1.6)
A 		4
B 6.3
(-2.5)
A 		16
(3)
A 		6.5
(-2.4)
A 		5.4
(-3)
A 		9.2
(-0.8)
A 		9.7
(-0.6)
A 		11
C 6
(-2.6)
A 		10.8
(-1.1)
A 		23.3
(3)
A 		9.9
(-1.4)
A 		5.7
(-2.7)
A 		4.9
(-3)
A 		18
avr 6.1
(-3) 		11.3
(2.1) 		12.2
(3) 		6.2
(-2.9) 		6.9
(-2.2) 		6.9
(-2.2) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.5
(-2.1)
A 		5.8
(3)
A 		0.7
(-3)
A 		1.7
(-1.8)
A 		5
B 1.5
(-2.2)
A 		7.7
(3)
A 		0.5
(-3)
A 		5.3
(1)
A 		7
C 0.9
(-3)
A 		1.9
(-1.1)
A 		2.6
(0.2)
A 		4.1
(3)
A 		3
avr 1.3
(-3) 		5.1
(3) 		1.3
(-3) 		3.7
(0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.1
(-1.9)
A 		2.5
(3)
A 		1.5
(-0.5)
A 		0.8
(-3)
A 		1.7
(0.2)
A 		1.5
(-0.5)
A 		2
B 2.2
(-1.8)
A 		5.3
(3)
A 		1.6
(-2.7)
A 		1.4
(-3)
A 		3.7
(0.5)
A 		3.6
(0.4)
A 		4
C 2.2
(-2.2)
A 		3.3
(-0.6)
A 		5.9
(3)
A 		2
(-2.4)
A 		1.8
(-2.7)
A 		1.6
(-3)
A 		4
avr 1.8
(-2) 		3.7
(3) 		3
(1.2) 		1.4
(-3) 		2.4
(-0.4) 		2.2
(-0.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181619_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1838
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.9 NCBI
Target Description Y47H9C.9 /REP_DB=WormBase Gene ID /WP=CE20269 /TR=Q9XWD9 /GB=CAA21736.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060617 NCBI Caenorhabditis elegans Y47H9C.9 (Y47H9C.9) mRNA, complete cds. 11/11 A 
SNAP00000036889 ENSEMBL cdna:SNAP chromosome:CEL140:I:11906911:11909598:-1 11/11 None
GENEFINDER00000036898 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11906911:11909580:-1 11/11 None
Y47H9C.9 ENSEMBL cdna:known chromosome:CEL140:I:11906911:11909580:-1 gene:Y47H9C.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11906841-11909511(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H9C.9
Entrez Gene 190000 Entrez gene
SwissProt Q9XWD9 EMBL-EBI
WormBase CE20269 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21736 Hypothetical protein Y47H9C.9 [Caenorhabditis elegans] ref|NP_493018.1| Y47H9C.9 [Caenorhabditis elegans] 0.0
blast CAA87099 Hypothetical protein C34C12.1 [Caenorhabditis elegans] ref|NP_497711.1| C34C12.1 [Caenorhabditis elegans] 0.0
blast AAD47131 Hypothetical protein T01A4.3 [Caenorhabditis elegans] ref|NP_491377.2| T01A4.3 [Caenorhabditis elegans] 1.0E-130
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.649999976158142
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.639999985694885
scop a.4.5.C-terminal fragment of elongation factor SelB All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; C-terminal fragment of elongation factor SelB 3.09999990463257
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 3.2E-125
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 3.2E-125
Sequence
Target Sequence 
>C. ELEGANS:181619_AT
atggtgctgatatgtctgcctggcagcagaatttcacaggaaatcacacgctaaaattat
tggaagaagctgcggtcctcgactatctaggcatttttcctgctggttcagatcgtgacg
gcatcgcgacttttctcatttcacttggcaaattgcaaaaactatgcgttgcccgaacac
tgagtgatgatgaaattaaactaatggatcaacacatcaatgacctttgggaagccctaa
aaagctacgctcctgatgacgtcgtcactccaaagcttcatgtgctcttggagcacgtga
tgccgttcgtaaacgcaaaaaagacctgggcgttgactagtgagcagggtatcgagtctc
ttcactcgtggtacaacaaactcaatgctcaaatccgaacttctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTGCTGATATGTCTGCCTGGCA 129 51 2009 Antisense
GGTCCTCGACTATCTAGGCATTTTT 219 501 2082 Antisense
GGCATTTTTCCTGCTGGTTCAGATC 71 537 2098 Antisense
GTTCAGATCGTGACGGCATCGCGAC 288 445 2114 Antisense
GACTTTTCTCATTTCACTTGGCAAA 91 373 2136 Antisense
AAAAGCTACGCTCCTGATGACGTCG 31 133 2248 Antisense
GTCGTCACTCCAAAGCTTCATGTGC 328 473 2269 Antisense
TTGGAGCACGTGATGCCGTTCGTAA 393 709 2296 Antisense
AAGACCTGGGCGTTGACTAGTGAGC 69 153 2329 Antisense
AGCAGGGTATCGAGTCTCTTCACTC 56 79 2351 Antisense
TCAATGCTCAAATCCGAACTTCTGC 703 631 2390 Antisense
Sequence Source Affymetrix Proprietary Database