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[181618_at]

Description ZK418.2 /REP_DB=WormBase Gene ID /WP=CE00730 /TR=Q23488 /GB=AAA50686.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 43.4
(-1.4)
P 		79.1
(3)
P 		29.9
(-3)
A 		58.5
(0.5)
A 		49
B 26.1
(-1.8)
A 		62.1
(2)
P 		14.4
(-3)
A 		72.2
(3)
P 		58
C 42.7
(0.3)
P 		52.2
(2.7)
P 		29.8
(-3)
M 		53.5
(3)
P 		24
avr 37.4
(-1.1) 		64.5
(3) 		24.7
(-3) 		61.4
(2.5) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 39.9
(-1.9)
A 		4.8
(-3)
A 		44.3
(-1.8)
A 		45.4
(-1.7)
P 		93.4
(-0.3)
P 		199.6
(3)
P 		195
B 34.9
(-2.5)
P 		43.4
(-2.2)
P 		23.9
(-3)
A 		37.5
(-2.4)
A 		110.8
(0.8)
P 		162.5
(3)
P 		139
C 31.6
(-3)
A 		50.9
(-2.3)
P 		46.3
(-2.5)
A 		44.5
(-2.5)
A 		109.9
(-0.2)
P 		201.5
(3)
P 		170
avr 35.5
(-2.9) 		33
(-3) 		38.2
(-2.8) 		42.5
(-2.6) 		104.7
(-0.2) 		187.9
(3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.8
(2.1)
P 		17.2
(3)
P 		7.8
(-3)
A 		8.6
(-2.5)
A 		9
B 8.3
(-0.5)
A 		15.3
(3)
P 		3.3
(-3)
A 		15.4
(3)
P 		12
C 14.1
(2.1)
P 		15
(3)
P 		10.4
(-1.6)
M 		9
(-3)
P 		6
avr 12.7
(0.8) 		15.8
(3) 		7.2
(-3) 		11
(-0.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 7.4
(-2.3)
A 		1.7
(-3)
A 		9.6
(-2)
A 		11.5
(-1.7)
P 		28.2
(0.4)
P 		48.6
(3)
P 		47
B 12.1
(-2.3)
P 		14.4
(-2.1)
P 		5.8
(-3)
A 		9.9
(-2.6)
A 		45
(1.3)
P 		60.6
(3)
P 		55
C 11.7
(-2.7)
A 		15.5
(-2.3)
P 		11.8
(-2.7)
A 		9
(-3)
A 		35.6
(-0.3)
P 		67.4
(3)
P 		58
avr 10.4
(-2.8) 		10.5
(-2.8) 		9.1
(-3) 		10.1
(-2.9) 		36.3
(0.3) 		58.9
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6123
Sequence Type Exemplar sequence
Representative Public ID ZK418.2 NCBI
Target Description ZK418.2 /REP_DB=WormBase Gene ID /WP=CE00730 /TR=Q23488 /GB=AAA50686.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027827(11), NM_001027828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027827 NCBI Caenorhabditis elegans ZK418.2a (ZK418.2) mRNA, complete cds. 11/11 None
NM_001027828 NCBI Caenorhabditis elegans ZK418.2b (ZK418.2) mRNA, complete cds. 11/11 None
SNAP00000003348 ENSEMBL cdna:SNAP chromosome:CEL140:III:7091316:7093254:1 11/11 None
GENEFINDER00000003358 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7091316:7093254:1 11/11 None
ZK418.2a ENSEMBL cdna:known chromosome:CEL140:III:7091229:7093322:1 gene:ZK418.2 11/11 None
ZK418.2b ENSEMBL cdna:known chromosome:CEL140:III:7091266:7093254:1 gene:ZK418.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7091226-7093252(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK418.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50686 Hypothetical protein ZK418.2a [Caenorhabditis elegans] ref|NP_001022998.1| ZK418.2a [Caenorhabditis elegans] 0.0
blast AAU20827 Hypothetical protein ZK418.2b [Caenorhabditis elegans] ref|NP_001022999.1| ZK418.2b [Caenorhabditis elegans] 1.0E-166
blast AAA50686 Hypothetical protein ZK418.2a [Caenorhabditis elegans] ref|NP_001022998.1| ZK418.2a [Caenorhabditis elegans] 1.0E-166
blast AAU20827 Hypothetical protein ZK418.2b [Caenorhabditis elegans] ref|NP_001022999.1| ZK418.2b [Caenorhabditis elegans] 1.0E-165
Sequence
Target Sequence 
>C. ELEGANS:181618_AT
ggatctccgagtgattttcatgtgcatggtccagtacttgccgattcgagtattgttatg
agagctgcagtggtgagccatatgagcattggtccacagattgcaatgatatctcatgaa
aatcgcttgatcttcaatactttgaaatcaagagatatgcatgtgattctcacttacatt
taccatcgtcgttatgtacttcctgactttgacgccgtttctcgagttggacagattcta
tcgcttctcttcagagatgaaatcccaaagtttttcgaaagttgggaagctgatctgatt
aagaaagtcaaaactcttgatcgttcggatactctgaagaccgtggctgaatgcgtgaga
gccctaatccgcgtcatgtctgctccgcatggctcaatgcttggagcctacaacgtatct
ctcattgttgcagctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTCCGAGTGATTTTCATGTGC 201 513 835 Antisense
TGCATGGTCCAGTACTTGCCGATTC 250 579 857 Antisense
ATTCTCACTTACATTTACCATCGTC 499 9 1000 Antisense
TACCATCGTCGTTATGTACTTCCTG 76 651 1015 Antisense
GTTGGACAGATTCTATCGCTTCTCT 175 437 1060 Antisense
AACTCTTGATCGTTCGGATACTCTG 35 141 1146 Antisense
GGATACTCTGAAGACCGTGGCTGAA 406 509 1161 Antisense
AATGCGTGAGAGCCCTAATCCGCGT 332 165 1184 Antisense
GCTCCGCATGGCTCAATGCTTGGAG 111 299 1216 Antisense
GCTTGGAGCCTACAACGTATCTCTC 285 305 1233 Antisense
ACGTATCTCTCATTGTTGCAGCTGA 688 93 1247 Antisense
Sequence Source Affymetrix Proprietary Database