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[181616_at]

Description F42C5.1 /REP_DB=WormBase Gene ID /WP=CE04554 /TR=Q20328 /GB=AAA81486.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 01      6grp_cgc > 37      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 6.7
(-3)
A 		13.2
(-2.1)
A 		14.8
(-1.9)
A 		52.2
(3)
A 		46
B 8.7
(3)
A 		3.5
(-3)
A 		5.9
(-0.2)
A 		4.9
(-1.4)
A 		5
C 11
(-1)
A 		6
(-3)
A 		8.2
(-2.1)
A 		21.1
(3)
A 		15
avr 8.8
(-2.6) 		7.6
(-3) 		9.6
(-2.4) 		26.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.8
(3)
A 		4.1
(-3)
A 		7.9
(0.4)
A 		5.2
(-2)
A 		6.9
(-0.5)
A 		10
(2.3)
A 		7
B 8.4
(-1.2)
A 		5.6
(-2)
A 		10.7
(-0.5)
A 		5.9
(-1.9)
A 		2.3
(-3)
A 		22.6
(3)
A 		20
C 2.4
(-3)
A 		14
(3)
A 		3.2
(-2.6)
A 		4.4
(-2)
A 		4.5
(-1.9)
A 		2.8
(-2.8)
A 		12
avr 7.2
(-0.8) 		7.9
(-0.3) 		7.3
(-0.8) 		5.2
(-2.5) 		4.6
(-3) 		11.8
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.4
(-3)
A 		2.9
(-2.4)
A 		3.9
(-1.3)
A 		7.6
(3)
A 		5
B 2.8
(3)
A 		0.9
(-3)
A 		1.4
(-1.4)
A 		1
(-2.7)
A 		2
C 3.7
(3)
A 		1.7
(-3)
A 		2.8
(0.3)
A 		3.6
(2.7)
A 		2
avr 3
(0.1) 		1.8
(-3) 		2.7
(-0.7) 		4.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2
(0.8)
A 		1.4
(-2.5)
A 		1.7
(-0.8)
A 		1.3
(-3)
A 		2.1
(1.4)
A 		2.4
(3)
A 		1
B 2.9
(-1.4)
A 		1.9
(-2.2)
A 		2.6
(-1.6)
A 		1.6
(-2.4)
A 		0.9
(-3)
A 		8.4
(3)
A 		8
C 0.9
(-2.8)
A 		4.3
(3)
A 		0.8
(-3)
A 		0.9
(-2.8)
A 		1.5
(-1.8)
A 		0.9
(-2.8)
A 		4
avr 1.9
(-1.6) 		2.5
(-0.2) 		1.7
(-2.1) 		1.3
(-3) 		1.5
(-2.5) 		3.9
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181616_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8958
Sequence Type Exemplar sequence
Representative Public ID F42C5.1 NCBI
Target Description F42C5.1 /REP_DB=WormBase Gene ID /WP=CE04554 /TR=Q20328 /GB=AAA81486.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F42C5.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F42C5.1 F42C5.1 /REP_DB=WormBase Gene ID /WP=CE04554 /TR=Q20328 /GB=AAA81486.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7313401-7314979(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:181616_AT
gatggctcctttgacaagagtcttggtacggaccaactcgttgtttgtagcgttgtacat
ggtatcaacgatacgggtcttgcgagtagtctctgaaaaatcagaatatgaacggtttat
aaagtataataacgaaacttacgctcagaggcccaggagaagtttccggagtcgaggcga
agagctctgtacttttcgtttcctccacgagtgcgaacgagacgaacgcggtcgaagctt
cagaaagacgatgactggagctgtgcaaggaactttggaagctgttgaagagaaatgcag
gagtcttcaaatgtggaggctgatgcgacgatctgaaattttaaaattttaccgttgttc
tattagttggtttttttttagttggtgggcttacttgggctccaagatatgctgcgttat
accgccatggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCTCCTTTGACAAGAGTCTTG 237 407 15 Antisense
GATACGGGTCTTGCGAGTAGTCTCT 698 421 84 Antisense
TAACGAAACTTACGCTCAGAGGCCC 140 637 144 Antisense
GAGGCCCAGGAGAAGTTTCCGGAGT 438 403 162 Antisense
GAAGAGCTCTGTACTTTTCGTTTCC 552 337 193 Antisense
GTTTCCTCCACGAGTGCGAACGAGA 213 449 212 Antisense
ACGAACGCGGTCGAAGCTTCAGAAA 84 93 236 Antisense
AGACGATGACTGGAGCTGTGCAAGG 275 69 260 Antisense
GTGGAGGCTGATGCGACGATCTGAA 190 489 327 Antisense
TTAGTTGGTGGGCTTACTTGGGCTC 616 651 392 Antisense
TATGCTGCGTTATACCGCCATGGAC 540 657 422 Antisense
Sequence Source Affymetrix Proprietary Database