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[181615_at]

Description ZC196.1 /REP_DB=WormBase Gene ID /WP=CE15066 /TR=O01631 /GB=AAB52294.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3.1
(-3)
A 		5.9
(-1.9)
A 		9.9
(-0.3)
A 		18.2
(3)
A 		15
B 2.5
(-3)
A 		3.6
(-2.6)
A 		20.9
(3)
A 		13.9
(0.7)
A 		18
C 28
(3)
A 		7.7
(-3)
A 		19.2
(0.4)
A 		22.7
(1.4)
A 		20
avr 11.2
(-0.4) 		5.7
(-3) 		16.7
(2.2) 		18.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 4.1
(-2.9)
A 		10.9
(-1.2)
A 		5
(-2.6)
A 		27.3
(3)
A 		22.7
(1.8)
A 		3.6
(-3)
A 		24
B 3.6
(-2.4)
A 		20.7
(3)
A 		12.7
(0.5)
A 		3
(-2.6)
A 		4.1
(-2.2)
A 		1.7
(-3)
A 		19
C 28
(3)
A 		4.9
(-2.5)
A 		3.6
(-2.8)
A 		2.8
(-3)
A 		2.7
(-3)
A 		3.2
(-2.9)
A 		25
avr 11.9
(2.8) 		12.2
(3) 		7.1
(-0.3) 		11
(2.2) 		9.8
(1.5) 		2.8
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-3)
A 		1.3
(-2.3)
A 		2.6
(2.6)
A 		2.7
(3)
A 		2
B 0.8
(-3)
A 		0.9
(-2.9)
A 		4.8
(3)
A 		3
(0.3)
A 		4
C 9.3
(3)
A 		2.2
(-3)
A 		6.7
(0.8)
A 		3.8
(-1.6)
A 		7
avr 3.7
(1.1) 		1.5
(-3) 		4.7
(3) 		3.2
(0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-3)
A 		3.9
(0)
A 		1.1
(-2.7)
A 		6.9
(3)
A 		6.9
(3)
A 		0.9
(-2.9)
A 		6
B 1.3
(-2.3)
A 		6.9
(3)
A 		3.1
(-0.6)
A 		0.8
(-2.8)
A 		1.7
(-2)
A 		0.6
(-3)
A 		6
C 10.4
(3)
A 		1.5
(-2.4)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		1.1
(-2.7)
A 		10
avr 4.2
(3) 		4.1
(2.8) 		1.7
(-1.5) 		2.8
(0.5) 		3.2
(1.2) 		0.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181615_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12378
Sequence Type Exemplar sequence
Representative Public ID ZC196.1 NCBI
Target Description ZC196.1 /REP_DB=WormBase Gene ID /WP=CE15066 /TR=O01631 /GB=AAB52294.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072851(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072851 NCBI Caenorhabditis elegans ZC196.1 (ZC196.1) mRNA, complete cds. 10/11 None
GENEFINDER00000023106 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8745392:8747371:1 9/11 None
ZC196.1 ENSEMBL cdna:known chromosome:CEL140:V:8746718:8747494:1 gene:ZC196.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023103 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8745392-8747495(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC196.1
Entrez Gene 191100 Entrez gene
SwissProt O01631 EMBL-EBI
WormBase CE36055 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04814 Hypothetical protein B0507.6 [Caenorhabditis elegans] ref|NP_505253.1| B0507.6 [Caenorhabditis elegans] 1.0E-107
blast AAB52294 Hypothetical protein ZC196.1 [Caenorhabditis elegans] ref|NP_505252.2| ZC196.1 [Caenorhabditis elegans] 4.0E-73
blast AAB52294 Hypothetical protein ZC196.1 [Caenorhabditis elegans] ref|NP_505252.2| ZC196.1 [Caenorhabditis elegans] 3.0E-58
Sequence
Target Sequence 
>C. ELEGANS:181615_AT
gagccaaaaactgttaatgaacccattgaaaaagtaaacgagaaatggaattcaaatgac
actgaaaaaatagatgaaattattgaaaatcttacgatttcgattgatgcaatgaaaatg
aatatatcacaagaaatggaaaaaaataaggtaaataaatcagaaatgaataatttcgaa
atagaaatgatatcttcaatgagcgagttaaaacaaaatatggacaataaaatgcaagaa
atgatgcaacttatgaaaaattttgttcaatcaggaaaatcagaaaatagtatgaagaca
aatgcaatctcggaaaacacgataaatgatgtccaccaagagcagcccgatgacaaacat
ttcagaaattcaacttcaacatttgaaaacggtgaaaccagcgatgatatcagcgccgtc
gattttgaattagttcagaacattccacagcaagatcaattaaatattacaaatgaaaac
gatgacgattcagaatcaagcattttttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAAAAACTGTTAATGAACCCA 229 385 892 Antisense
GAAATGATATCTTCAATGAGCGAGT 392 361 1075 Antisense
GACAAATGCAATCTCGGAAAACACG 212 359 1188 Antisense
TAAATGATGTCCACCAAGAGCAGCC 179 641 1214 Antisense
GAGCAGCCCGATGACAAACATTTCA 100 389 1231 Antisense
ACCAGCGATGATATCAGCGCCGTCG 660 85 1288 Antisense
GATATCAGCGCCGTCGATTTTGAAT 121 427 1297 Antisense
GCGCCGTCGATTTTGAATTAGTTCA 351 287 1304 Antisense
ATTAGTTCAGAACATTCCACAGCAA 692 9 1320 Antisense
GAACATTCCACAGCAAGATCAATTA 406 351 1329 Antisense
CGATTCAGAATCAAGCATTTTTTAT 561 247 1377 Antisense
Sequence Source Affymetrix Proprietary Database