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[181613_at]

Description C50D2.8 /REP_DB=WormBase Gene ID /WP=CE08893 /TR=O44794 /GB=AAB94955.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 70.6
(-0.2)
P 		81.2
(0.3)
A 		8.1
(-3)
A 		142.5
(3)
P 		134
B 68.6
(1)
A 		53.2
(-1.1)
A 		38.9
(-3)
P 		84
(3)
P 		45
C 55.7
(-3)
A 		91.3
(-0.6)
A 		55
(-3)
A 		145.5
(3)
P 		91
avr 65
(-0.9) 		75.2
(-0.3) 		34
(-3) 		124
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 31.6
(-2.3)
A 		35.4
(-1.6)
A 		59.6
(3)
A 		51.5
(1.5)
A 		28.1
(-3)
A 		45.9
(0.4)
A 		32
B 28.6
(-3)
A 		41.8
(0.1)
A 		47.2
(1.4)
A 		37.2
(-1)
A 		31.1
(-2.4)
A 		54.1
(3)
M 		26
C 29.5
(-2.6)
A 		68.8
(3)
A 		43.6
(-0.6)
A 		65.9
(2.6)
P 		26.5
(-3)
A 		37.5
(-1.4)
A 		42
avr 29.9
(-2.7) 		48.7
(2.3) 		50.1
(2.6) 		51.5
(3) 		28.6
(-3) 		45.8
(1.5) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.7
(3)
P 		17.6
(0.9)
A 		2.1
(-3)
A 		20.9
(1.8)
P 		24
B 21.9
(3)
A 		13.1
(-1.1)
A 		9
(-3)
P 		17.9
(1.1)
P 		13
C 18.4
(-3)
A 		26.2
(3)
A 		19.2
(-2.4)
A 		24.5
(1.7)
P 		8
avr 22
(3) 		19
(1.5) 		10.1
(-3) 		21.1
(2.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.8
(-3)
A 		12.6
(2.6)
A 		13
(2.9)
A 		13.1
(3)
A 		8.5
(-0.8)
A 		11.2
(1.4)
A 		7
B 10
(-2.9)
A 		13.9
(-0.7)
A 		11.5
(-2.1)
A 		9.9
(-3)
A 		12.6
(-1.4)
A 		20.2
(3)
M 		10
C 10.9
(-1.9)
A 		21
(3)
A 		11.1
(-1.8)
A 		13.3
(-0.7)
P 		8.6
(-3)
A 		12.5
(-1.1)
A 		12
avr 8.9
(-3) 		15.8
(3) 		11.9
(-0.4) 		12.1
(-0.2) 		9.9
(-2.1) 		14.6
(2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181613_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4458
Sequence Type Exemplar sequence
Representative Public ID C50D2.8 NCBI
Target Description C50D2.8 /REP_DB=WormBase Gene ID /WP=CE08893 /TR=O44794 /GB=AAB94955.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061257 NCBI Caenorhabditis elegans C50D2.8 (C50D2.8) mRNA, complete cds. 11/11 None
SNAP00000026470 ENSEMBL cdna:SNAP chromosome:CEL140:II:96219:97942:-1 11/11 None
GENEFINDER00000026485 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:96095:97942:-1 11/11 None
C50D2.8 ENSEMBL cdna:known chromosome:CEL140:II:96127:97942:-1 gene:C50D2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:96094-97942(-) 97.66 100.0
Public Domain and Genome References
Gene Title
Ensembl C50D2.8
Entrez Gene 183652 Entrez gene
SwissProt Q8ITY5 EMBL-EBI
WormBase CE34769 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16107_S_AT LUC7 N_terminus domain-containing protein at
ATH1-121501:248403_AT LUC7 N_terminus domain-containing protein at
DROSOPHILA_2:1625927_AT dm
DROSGENOME1:144607_AT dm
CHICKEN:GGA.13017.1.S1_S_AT similar to cisplatin resistance-associated overexpressed protein gga
CHICKEN:GGAAFFX.12793.1.S1_S_AT similar to cisplatin resistance-associated overexpressed protein gga
HG-U133A:203804_S_AT cisplatin resistance-associated overexpressed protein hs
HG-U133_PLUS_2:203804_S_AT cisplatin resistance-associated overexpressed protein hs
HG-FOCUS:203804_S_AT cisplatin resistance-associated overexpressed protein hs
HG-U133A_2:203804_S_AT cisplatin resistance-associated overexpressed protein hs
HG-U133_PLUS_2:220044_X_AT cisplatin resistance-associated overexpressed protein hs
HG-U133A:220044_X_AT cisplatin resistance-associated overexpressed protein hs
HG-U133A_2:220044_X_AT cisplatin resistance-associated overexpressed protein hs
HU35KSUBA:RC_AA449973_AT cisplatin resistance-associated overexpressed protein hs
HU35KSUBA:R87834_AT cisplatin resistance-associated overexpressed protein hs
HU35KSUBB:RC_AA218663_AT cisplatin resistance-associated overexpressed protein hs
HU35KSUBD:RC_AA412738_AT cisplatin resistance-associated overexpressed protein hs
U133_X3P:G7706534_3P_S_AT cisplatin resistance-associated overexpressed protein hs
U133_X3P:HS.3688.1.S1_3P_A_AT cisplatin resistance-associated overexpressed protein hs
HG-U133A_2:208835_S_AT cisplatin resistance-associated overexpressed protein hs
HG-FOCUS:208835_S_AT cisplatin resistance-associated overexpressed protein hs
HG-U133_PLUS_2:208835_S_AT cisplatin resistance-associated overexpressed protein hs
HG-U133A:208835_S_AT cisplatin resistance-associated overexpressed protein hs
HG-U95AV2:34397_AT cisplatin resistance-associated overexpressed protein hs
HG-U95B:55032_AT cisplatin resistance-associated overexpressed protein hs
HU35KSUBA:AA132328_AT Cisplatin resistance-associated overexpressed protein hs
HU35KSUBA:RC_AA447587_AT Cisplatin resistance-associated overexpressed protein hs
HU35KSUBA:RC_AA399047_AT Cisplatin resistance-associated overexpressed protein hs
U133_X3P:HS.32112.2.S1_3P_X_AT Cisplatin resistance-associated overexpressed protein hs
U133_X3P:HS.32112.2.S1_3P_AT Cisplatin resistance-associated overexpressed protein hs
U133_X3P:HS.32112.2.S1_3P_A_AT Cisplatin resistance-associated overexpressed protein hs
U133_X3P:HS.32112.1.A1_3P_A_AT Cisplatin resistance-associated overexpressed protein hs
U133_X3P:HS.12653.0.A1_3P_AT Cisplatin resistance-associated overexpressed protein hs
U133_X3P:242389_3P_AT Cisplatin resistance-associated overexpressed protein hs
HG-U133_PLUS_2:229193_AT Cisplatin resistance-associated overexpressed protein hs
HG-U133B:229193_AT Cisplatin resistance-associated overexpressed protein hs
HG-U133_PLUS_2:241792_X_AT Cisplatin resistance-associated overexpressed protein hs
HG-U133B:241792_X_AT Cisplatin resistance-associated overexpressed protein hs
HG-U133_PLUS_2:242389_AT Cisplatin resistance-associated overexpressed protein hs
HG-U133B:242389_AT Cisplatin resistance-associated overexpressed protein hs
HG-U95B:57642_AT Cisplatin resistance-associated overexpressed protein hs
HG-U95C:61694_AT Cisplatin resistance-associated overexpressed protein hs
HG-U133_PLUS_2:241086_AT Cisplatin resistance-associated overexpressed protein hs
HG-U133B:241086_AT Cisplatin resistance-associated overexpressed protein hs
HG-U95E:74559_AT Cisplatin resistance-associated overexpressed protein hs
HG-U95D:86582_AT Cisplatin resistance-associated overexpressed protein hs
HG-U95D:88164_AT Cisplatin resistance-associated overexpressed protein hs
HU35KSUBD:RC_C20658_AT Cisplatin resistance-associated overexpressed protein hs
U133_X3P:HS.32112.0.A1_3P_AT Cisplatin resistance-associated overexpressed protein hs
U133_X3P:HS.32112.0.A1_3P_X_AT Cisplatin resistance-associated overexpressed protein hs
MOUSE430A_2:1451485_AT RIKEN cDNA 3300001P08 gene mm
MOE430A:1451485_AT RIKEN cDNA 3300001P08 gene mm
MOUSE430_2:1451485_AT RIKEN cDNA 3300001P08 gene mm
MU11KSUBA:AA544755_S_AT RIKEN cDNA 3300001P08 gene mm
MG-U74BV2:110360_AT RIKEN cDNA 3300001P08 gene mm
MG-U74CV2:138132_AT RIKEN cDNA 3300001P08 gene mm
MG-U74AV2:160791_AT RIKEN cDNA 3300001P08 gene mm
MG-U74BV2:162794_AT RIKEN cDNA 3300001P08 gene mm
MOE430A:1424802_A_AT RIKEN cDNA 3300001P08 gene mm
MOUSE430A_2:1424802_A_AT RIKEN cDNA 3300001P08 gene mm
MOUSE430_2:1424802_A_AT RIKEN cDNA 3300001P08 gene mm
MG-U74CV2:167530_I_AT RIKEN cDNA 3300001P08 gene (3300001P08Rik), mRNA mm
MU19KSUBB:TC34799_AT RIKEN cDNA 3300001P08 gene (3300001P08Rik), mRNA mm
MU19KSUBC:TC41898_AT RIKEN cDNA 3300001P08 gene (3300001P08Rik), mRNA mm
RG-U34B:RC_AA924787_AT similar to cisplatin resistance-associated overexpressed protein (predicted) rn
RG-U34B:RC_AA901272_F_AT similar to cisplatin resistance-associated overexpressed protein (predicted) rn
RAE230A:1399018_AT similar to cisplatin resistance-associated overexpressed protein (predicted) rn
RAT230_2:1399018_AT similar to cisplatin resistance-associated overexpressed protein (predicted) rn
RAE230B:1382957_AT similar to cisplatin resistance-associated overexpressed protein (predicted) rn
RAT230_2:1382957_AT similar to cisplatin resistance-associated overexpressed protein (predicted) rn
RAE230B:1384615_AT Similar to cisplatin resistance-associated overexpressed protein (predicted) rn
RAT230_2:1384615_AT Similar to cisplatin resistance-associated overexpressed protein (predicted) rn
RG-U34C:RC_AI071319_AT Similar to cisplatin resistance-associated overexpressed protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_493658 C50D2.8 [Caenorhabditis elegans] gb|AAN73873.2| Hypothetical protein C50D2.8 [Caenorhabditis elegans] 1.0E-143
blast NP_493658 C50D2.8 [Caenorhabditis elegans] gb|AAN73873.2| Hypothetical protein C50D2.8 [Caenorhabditis elegans] 1.0E-137
blast CAE62812 Hypothetical protein CBG06988 [Caenorhabditis briggsae] 1.0E-114
blast CAE62812 Hypothetical protein CBG06988 [Caenorhabditis briggsae] 1.0E-111
blast AAH95066 LOC553425 protein [Danio rerio] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR004882 EMBL-EBI Protein of unknown function DUF259 2.3E-50
Pfam IPR004882 EMBL-EBI Protein of unknown function DUF259 9.1E-46
Sequence
Target Sequence 
>C. ELEGANS:181613_AT
caaatgaacgaaccgaacccacaagccatgccaccgatgcttgacgaaatggcaattaag
ccaatggaggtttgtgaagtgtgtgggagcatgctcatcgtgaatgacgctcaacagcgt
atcgaagaacatttgactggaaaaatgcacacaggtttccaaaaaatccggactatgatt
caacagcttaagaaacaccgtaaatttttaaatttctttgttgtaaaaaccgtaaatttt
ccaattttttggttttttaacttaaaaaccgagaaaaacgtgctgaagcagcaacaacat
ctgacactgagcgccgccgtcaccgaagtcgttctccacatcgttccagtcatgattcca
gggattccagggattccagagatcgtcgagagcatcgtcatcatggatatgatagagatc
ggagacaccacagagatcgaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATGAACGAACCGAACCCACAAG 455 179 550 Antisense
CAAGCCATGCCACCGATGCTTGACG 169 187 571 Antisense
GTGAAGTGTGTGGGAGCATGCTCAT 700 481 623 Antisense
GCATGCTCATCGTGAATGACGCTCA 574 309 638 Antisense
GCACACAGGTTTCCAAAAAATCCGG 177 315 696 Antisense
ATCCGGACTATGATTCAACAGCTTA 411 39 715 Antisense
GCAACAACATCTGACACTGAGCGCC 359 319 840 Antisense
CACATCGTTCCAGTCATGATTCCAG 26 197 886 Antisense
GGATTCCAGGGATTCCAGAGATCGT 704 507 911 Antisense
ATCGTCGAGAGCATCGTCATCATGG 215 35 931 Antisense
CGGAGACACCACAGAGATCGAAGAT 212 243 969 Antisense
Sequence Source Affymetrix Proprietary Database