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[181612_at]

Description T17H7.5 /REP_DB=WormBase Gene ID /WP=CE07506 /TR=Q22534 /GB=AAC48171.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 45      6grp_cgc > 23      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 334
1 2 3 4 range
A 288.3
(3)
P 		174
(0.2)
P 		111.5
(-1.4)
A 		46.6
(-3)
A 		242
B 252.4
(3)
P 		169.9
(0.3)
A 		107.4
(-1.7)
A 		68.8
(-3)
A 		184
C 359.6
(3)
P 		235.9
(0.8)
P 		116.9
(-1.4)
A 		26
(-3)
A 		334
avr 300.1
(3) 		193.3
(0.5) 		111.9
(-1.5) 		47.1
(-3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 130.7
(-0.7)
A 		256.9
(3)
P 		57.1
(-2.8)
A 		68.5
(-2.5)
A 		51.7
(-3)
A 		68.8
(-2.5)
A 		205
B 153.1
(3)
P 		132
(2.1)
P 		72.7
(-0.2)
A 		4.6
(-3)
A 		18.4
(-2.4)
A 		36.5
(-1.7)
A 		149
C 279.7
(3)
P 		121.9
(-0.8)
P 		124.7
(-0.7)
P 		52.5
(-2.5)
A 		92.3
(-1.5)
A 		30.9
(-3)
A 		249
avr 187.8
(3) 		170.3
(2.3) 		84.8
(-1.2) 		41.9
(-3) 		54.1
(-2.5) 		45.4
(-2.9) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 105
(3)
P 		37.8
(-1.1)
P 		29.2
(-1.6)
A 		6.8
(-3)
A 		98
B 80.5
(3)
P 		42
(-0.5)
A 		24.9
(-2.1)
A 		14.7
(-3)
A 		66
C 119.1
(3)
P 		67.8
(0.3)
P 		40.8
(-1.1)
A 		4.4
(-3)
A 		115
avr 101.5
(3) 		49.2
(-0.4) 		31.6
(-1.5) 		8.6
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 24.1
(-2.1)
A 		91.4
(3)
P 		12.4
(-3)
A 		17.4
(-2.6)
A 		15.6
(-2.8)
A 		16.8
(-2.7)
A 		79
B 53.3
(3)
P 		43.9
(1.9)
P 		17.7
(-1.1)
A 		1.2
(-3)
A 		7.5
(-2.3)
A 		13.6
(-1.6)
A 		52
C 103.7
(3)
P 		37.2
(-1.3)
P 		31.7
(-1.6)
P 		10.6
(-3)
A 		29.9
(-1.7)
A 		10.3
(-3)
A 		93
avr 60.4
(3) 		57.5
(2.7) 		20.6
(-1.7) 		9.7
(-3) 		17.7
(-2.1) 		13.6
(-2.5) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181612_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8141
Sequence Type Exemplar sequence
Representative Public ID T17H7.5 NCBI
Target Description T17H7.5 /REP_DB=WormBase Gene ID /WP=CE07506 /TR=Q22534 /GB=AAC48171.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064846 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
SNAP00000004137 ENSEMBL cdna:SNAP chromosome:CEL140:III:732347:735920:-1 11/11 None
GENEFINDER00000004141 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:732347:740083:-1 11/11 None
T17H7.4d ENSEMBL cdna:known chromosome:CEL140:III:729395:738972:-1 gene:T17H7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175227 12 1 NM_001027598 188158_at (11)
NM_064843 188158_at (11)
NM_064844 188158_at (11)
NM_064845 188158_at (11)
NM_064846 181612_at (11)
NM_064847 188158_at (11)
NM_171067 188158_at (11)
NM_171068 188158_at (11)
NM_171069 188158_at (11)
NM_171070 174770_at (11), 188158_at (11)
NM_171071 188158_at (11)
NM_171859 188158_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:732346-738972(-) 97.24 100.0
Public Domain and Genome References
Ensembl T17H7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48169 Gex interacting protein protein 16, isoform d [Caenorhabditis elegans] ref|NP_497247.2| GEX Interacting protein family member (gei-16) [Caenorhabditis elegans] 0.0
blast T28897 hypothetical protein T17H7.5 - Caenorhabditis elegans 0.0
blast AAM97959 Gex interacting protein protein 16, isoform k [Caenorhabditis elegans] ref|NP_741077.1| GEX Interacting protein family member (gei-16) [Caenorhabditis elegans] 3.0E-46
Sequence
Target Sequence 
>C. ELEGANS:181612_AT
catgcaacagttacacttcccgatgccagactatgagccaccacagccaccacagcagag
aagacgtacagagtcatctggctatcgaggagggcctccaccgccgcctcctatgcctca
acaacagcctagagagatgtcacgccgcaactcggtcgcttccacgcgcatagactcgcc
gtctctgatgattcctcaccatcgacagtctcgatcagactccagaggccccccacaaat
gtctagagctgcttcatcaattccgctatctccacaaccgactcctcagcatcatcacca
tcatcattctcaaagacctacaacgccgggagccactcgtgcccgcaactacatcgcgag
ggctaccgcaccaagtccaacgccgtactcatacgatcgtgcaagagcttacgtgccacc
agcattaccaccgggttatcggctagccgacccgattccggatcaaagagctatgtctcc
gtccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCAACAGTTACACTTCCCGATG 141 211 2397 Antisense
TTCCCGATGCCAGACTATGAGCCAC 506 695 2413 Antisense
ACAGCCTAGAGAGATGTCACGCCGC 516 107 2520 Antisense
CTGATGATTCCTCACCATCGACAGT 240 239 2581 Antisense
TAGAGCTGCTTCATCAATTCCGCTA 260 653 2640 Antisense
ATCACCATCATCATTCTCAAAGACC 342 29 2690 Antisense
CCCGCAACTACATCGCGAGGGCTAC 687 193 2738 Antisense
AACGCCGTACTCATACGATCGTGCA 637 143 2775 Antisense
TCGTGCAAGAGCTTACGTGCCACCA 663 605 2793 Antisense
ACCAGCATTACCACCGGGTTATCGG 228 83 2814 Antisense
GATCAAAGAGCTATGTCTCCGTCCC 483 419 2857 Antisense
Sequence Source Affymetrix Proprietary Database