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[181611_at]

Description B0336.4 /REP_DB=WormBase Gene ID /WP=CE00694 /TR=Q10955 /GB=AAK18853.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 81      6grp_total > 51      4grp_total > 63      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 256.4
(3)
P 		203.2
(0.6)
P 		200.8
(0.5)
P 		124
(-3)
P 		132
B 333.5
(3)
P 		177.4
(-2.3)
P 		227.1
(-0.6)
P 		156.6
(-3)
P 		177
C 252.5
(2.2)
P 		179.5
(-1.8)
P 		267.8
(3)
P 		157.5
(-3)
P 		110
avr 280.8
(3) 		186.7
(-1.2) 		231.9
(0.8) 		146
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 239.2
(-0.9)
P 		327.6
(3)
P 		296.2
(1.6)
P 		301.3
(1.9)
P 		195.1
(-2.8)
P 		190.3
(-3)
P 		137
B 249.3
(0.2)
P 		237.3
(-0.1)
P 		299.4
(1.5)
P 		357.8
(3)
P 		211.2
(-0.8)
P 		124.8
(-3)
P 		233
C 326
(1.3)
P 		217.7
(-1.4)
P 		394.9
(3)
P 		326.2
(1.3)
P 		250.5
(-0.6)
P 		153.1
(-3)
P 		242
avr 271.5
(1) 		260.9
(0.6) 		330.2
(3) 		328.4
(2.9) 		218.9
(-0.8) 		156.1
(-3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 93.3
(3)
P 		44.1
(-0.9)
P 		52.5
(-0.3)
P 		18.2
(-3)
P 		75
B 106.3
(3)
P 		43.8
(-2.1)
P 		52.6
(-1.4)
P 		33.4
(-3)
P 		73
C 83.6
(2.1)
P 		51.6
(-0.8)
P 		93.3
(3)
P 		26.6
(-3)
P 		67
avr 94.4
(3) 		46.5
(-1.2) 		66.1
(0.5) 		26.1
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 44.1
(-3)
P 		116.5
(3)
P 		64.5
(-1.3)
P 		76.4
(-0.3)
P 		58.9
(-1.8)
P 		46.3
(-2.8)
P 		72
B 86.7
(2)
P 		79
(1)
P 		72.7
(0.3)
P 		94.8
(3)
P 		85.8
(1.9)
P 		46.5
(-3)
P 		48
C 120.8
(3)
P 		66.4
(-1.7)
P 		100.5
(1.2)
P 		65.6
(-1.8)
P 		81.1
(-0.4)
P 		51.3
(-3)
P 		70
avr 83.9
(2.5) 		87.3
(3) 		79.2
(1.8) 		78.9
(1.7) 		75.3
(1.2) 		48
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181611_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6225
Sequence Type Exemplar sequence
Representative Public ID B0336.4 NCBI
Target Description B0336.4 /REP_DB=WormBase Gene ID /WP=CE00694 /TR=Q10955 /GB=AAK18853.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065828 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-5) (rgs-5) mRNA, complete cds. 11/11 None
SNAP00000008875 ENSEMBL cdna:SNAP chromosome:CEL140:III:5698639:5702002:1 11/11 None
GENEFINDER00000008889 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5698639:5702002:1 11/11 None
B0336.4 ENSEMBL cdna:known chromosome:CEL140:III:5698529:5702251:1 gene:B0336.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5698637-5702001(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rgs-5
Ensembl B0336.4
Entrez Gene 175794 Entrez gene
SwissProt Q10955 EMBL-EBI
WormBase CE32098 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.27724.1.S1_AT similar to A-kinase anchor protein 10 precursor cfa
DROSOPHILA_2:1640818_AT dm
DROSGENOME1:144226_AT dm
CHICKEN:GGAAFFX.26285.1.S1_AT similar to A kinase (PRKA) anchor protein 10; protein kinase A anchoring protein gga
HG-U95AV2:36632_AT A kinase (PRKA) anchor protein 10 hs
HG-U95AV2:35971_AT A kinase (PRKA) anchor protein 10 hs
HG-U133_PLUS_2:205045_AT A kinase (PRKA) anchor protein 10 hs
HG-U133A:205045_AT A kinase (PRKA) anchor protein 10 hs
HG-U133A_2:205045_AT A kinase (PRKA) anchor protein 10 hs
HUGENEFL:U00957_AT A kinase (PRKA) anchor protein 10 hs
U133_X3P:G6005706_3P_AT A kinase (PRKA) anchor protein 10 hs
U133_X3P:HS.168450.0.A1_3P_S_AT A kinase (PRKA) anchor protein 10 hs
U133_X3P:HS.168450.0.A1_3P_AT A kinase (PRKA) anchor protein 10 hs
U133_X3P:236006_3P_S_AT A kinase (PRKA) anchor protein 10 hs
HG-U133_PLUS_2:236006_S_AT A kinase (PRKA) anchor protein 10 hs
HG-U133B:236006_S_AT A kinase (PRKA) anchor protein 10 hs
HG-U133_PLUS_2:236007_AT A kinase (PRKA) anchor protein 10 hs
HG-U133B:236007_AT A kinase (PRKA) anchor protein 10 hs
HG-U95E:84442_AT A kinase (PRKA) anchor protein 10 hs
HG-U133_PLUS_2:213396_S_AT A kinase (PRKA) anchor protein 10 hs
HG-U133A_2:213396_S_AT A kinase (PRKA) anchor protein 10 hs
HG-FOCUS:213396_S_AT A kinase (PRKA) anchor protein 10 hs
HG-U133A:213396_S_AT A kinase (PRKA) anchor protein 10 hs
U133_X3P:HS.75456.1.A1_3P_A_AT A kinase (PRKA) anchor protein 10 hs
HG-U95AV2:36633_AT A kinase (PRKA) anchor protein 10 hs
HG-U95C:49334_AT A kinase (PRKA) anchor protein 10 hs
HG-U95D:70352_AT A kinase (PRKA) anchor protein 10 hs
MOE430A:1421121_AT A kinase (PRKA) anchor protein 10 mm
MOUSE430A_2:1421121_AT A kinase (PRKA) anchor protein 10 mm
MOUSE430_2:1421121_AT A kinase (PRKA) anchor protein 10 mm
MG-U74BV2:163162_AT A kinase (PRKA) anchor protein 10 mm
MG-U74CV2:166419_AT A kinase (PRKA) anchor protein 10 mm
MOE430B:1428482_AT A kinase (PRKA) anchor protein 10 mm
MOUSE430_2:1428482_AT A kinase (PRKA) anchor protein 10 mm
MOE430B:1441829_S_AT A kinase (PRKA) anchor protein 10 mm
MOUSE430_2:1441829_S_AT A kinase (PRKA) anchor protein 10 mm
MG-U74CV2:133918_AT A kinase (PRKA) anchor protein 10 (Akap10), mRNA mm
MG-U74CV2:134509_AT A kinase (PRKA) anchor protein 10 (Akap10), mRNA mm
MOUSE430_2:1447570_S_AT A kinase (PRKA) anchor protein 10 (Akap10), mRNA mm
MOE430B:1447570_S_AT A kinase (PRKA) anchor protein 10 (Akap10), mRNA mm
MU19KSUBB:TC29426_AT A kinase (PRKA) anchor protein 10 (Akap10), mRNA mm
RG-U34C:RC_AI172035_AT A kinase (PRKA) anchor protein 10 (predicted) rn
RAE230A:1372194_AT A kinase (PRKA) anchor protein 10 (predicted) rn
RAT230_2:1372194_AT A kinase (PRKA) anchor protein 10 (predicted) rn
RAE230B:1395278_AT A kinase (PRKA) anchor protein 10 (predicted) rn
RAT230_2:1395278_AT A kinase (PRKA) anchor protein 10 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18853 Regulator of g protein signaling protein 5 [Caenorhabditis elegans] ref|NP_498229.3| Regulator of G protein Signaling family member (rgs-5) [Caenorhabditis elegans] 0.0
blast CAE64321 Hypothetical protein CBG08999 [Caenorhabditis briggsae] 0.0
blast T15335 hypothetical protein B0336.4 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:181611_AT
gactgcatgcttttttaggcttcatgataagtacttgtcggatttcctgaaaacttcgta
ctatcacaactatcttggagagcttcaatcattcatcgacttcacagtggagttgccaag
gaaagttagaaatcgggcggcaagctcatctgatgtggcatcgtccacagactccctgac
acacgctttcagtcgacatttggaagttcttgagaaaaaaatgaatgacaaggacgagtc
cactcaaacaccgacgggatcgccgagctcatcaaaacggagcacaccgaggacaccaag
aagtagtagattggcggaggtggatgaaatgggaagatatcatgcattatatgatgattc
acattcacagacaccccaaaagccaatgagaataaaatccaccttacgaaagtacctgga
taagaatacactccgtgaggaagagattgccgaagaagttgctcggacaattattcgaga
tatgcaagaaatggttgcctcttctgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGCATGCTTTTTTAGGCTTCAT 314 375 741 Antisense
GATAAGTACTTGTCGGATTTCCTGA 404 421 766 Antisense
AACTTCGTACTATCACAACTATCTT 240 139 792 Antisense
GCTTCAATCATTCATCGACTTCACA 66 305 822 Antisense
TAGAAATCGGGCGGCAAGCTCATCT 315 653 867 Antisense
GCTCATCTGATGTGGCATCGTCCAC 386 301 884 Antisense
CACACGCTTTCAGTCGACATTTGGA 673 193 920 Antisense
CTCAAACACCGACGGGATCGCCGAG 408 225 983 Antisense
AACGGAGCACACCGAGGACACCAAG 471 143 1016 Antisense
GATGATTCACATTCACAGACACCCC 302 411 1093 Antisense
AAGAAATGGTTGCCTCTTCTGCAGA 456 153 1226 Antisense
Sequence Source Affymetrix Proprietary Database