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[181610_at]

Description F40B1.1 /REP_DB=WormBase Gene ID /WP=CE10156 /TR=O76568 /GB=AAC26268.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 19      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.4
(-3)
A 		4.1
(-1.8)
A 		5.1
(-0)
A 		6.8
(3)
A 		3
B 5.1
(1)
A 		3.6
(-2)
A 		3.1
(-3)
A 		6.1
(3)
A 		3
C 2
(-2.1)
A 		5.9
(2)
A 		1.1
(-3)
A 		6.9
(3)
A 		6
avr 3.5
(-2.3) 		4.5
(-0.6) 		3.1
(-3) 		6.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.1
(0.7)
A 		2.4
(-3)
A 		3.6
(-1.4)
A 		6.8
(3)
A 		4.2
(-0.5)
A 		4
(-0.8)
A 		4
B 2.6
(-3)
A 		3.3
(-2.8)
A 		4.4
(-2.4)
A 		3.3
(-2.8)
A 		10.3
(-0.5)
A 		21.3
(3)
A 		19
C 2.9
(-2.8)
A 		5.3
(1.4)
A 		2.8
(-3)
A 		6.2
(3)
A 		4.4
(-0.2)
A 		5.8
(2.3)
A 		3
avr 3.5
(-3) 		3.7
(-2.8) 		3.6
(-2.9) 		5.4
(-1.3) 		6.3
(-0.6) 		10.4
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.2
(1.5)
A 		0.9
(-3)
A 		1.3
(3)
A 		1
(-1.5)
A 		0
B 1.6
(3)
A 		0.9
(-1.7)
A 		0.7
(-3)
A 		1.3
(1)
A 		1
C 0.7
(-1.6)
A 		1.7
(3)
A 		0.4
(-3)
A 		1.2
(0.7)
A 		1
avr 1.2
(3) 		1.2
(3) 		0.8
(-3) 		1.2
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.9
(-2.3)
A 		0.9
(-2.3)
A 		0.8
(-3)
A 		1.7
(3)
A 		1.3
(0.3)
A 		1
(-1.7)
A 		1
B 0.9
(-3)
A 		1.1
(-2.8)
A 		1.1
(-2.8)
A 		0.9
(-3)
A 		4.2
(-0.2)
A 		7.9
(3)
A 		7
C 1.1
(-1)
A 		1.6
(1.5)
A 		0.7
(-3)
A 		1.3
(0)
A 		1.4
(0.5)
A 		1.9
(3)
A 		1
avr 1
(-2.8) 		1.2
(-2.3) 		0.9
(-3) 		1.3
(-2.1) 		2.3
(0.1) 		3.6
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181610_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5709
Sequence Type Exemplar sequence
Representative Public ID F40B1.1 NCBI
Target Description F40B1.1 /REP_DB=WormBase Gene ID /WP=CE10156 /TR=O76568 /GB=AAC26268.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061886 NCBI Caenorhabditis elegans F40B1.1 (F40B1.1) mRNA, complete cds. 11/11 None
SNAP00000002101 ENSEMBL cdna:SNAP chromosome:CEL140:II:2520966:2522045:-1 11/11 None
GENEFINDER00000002103 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2520966:2522045:-1 11/11 None
F40B1.1 ENSEMBL cdna:known chromosome:CEL140:II:2520966:2522045:-1 gene:F40B1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2520964-2522044(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-13
Ensembl F40B1.1
Entrez Gene 185510 Entrez gene
SwissProt O76568 EMBL-EBI
WormBase CE10156 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26268 Hypothetical protein F40B1.1 [Caenorhabditis elegans] ref|NP_494287.1| F40B1.1 [Caenorhabditis elegans] 1.0E-171
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 1.0E-94
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 1.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.3E-37
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.0E-39
Sequence
Target Sequence 
>C. ELEGANS:181610_AT
ttttcgaatgcgcatagttatggtaatggaacgactgagttcatttcctggaacaaattg
ataaaagactatctaatcgatgatgtaatcactgttgaagccgctgtgaagatcatcaag
acgactggaatctcgaagaaagcgctcaaaggctttgagaaatcgaatgaagaattttcc
gatgtggttctcgcggtcggagacaaagagttcttcgtgctcaaacagttcctcgcctac
cattcttcatacttcaaatctcttcttctcggaaaatttgcagaatctgatcagaaggaa
gtcacacttcaggacattgatcccaccgattttcagaatcttctagaggttctgtatggt
gaacccgcgattgatgatgaaactatcgatggaattcttcacttggctcatatgtacgac
atgtctgttccgcttcgaaaatgcgaagagtttctaatcaatgaatctgaaaagtcgatg
aaggatcaactcaaaatcgcaaaacaataccaattggagaagttgaagaaagcttgtctc
ctgaaaatcaacacagtcgatgagatcaaagcggccgtggctggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCGAATGCGCATAGTTATGGTA 503 673 289 Antisense
GGAACGACTGAGTTCATTTCCTGGA 60 531 316 Antisense
GCGGTCGGAGACAAAGAGTTCTTCG 180 289 481 Antisense
AGAGTTCTTCGTGCTCAAACAGTTC 419 67 495 Antisense
AGAAGGAAGTCACACTTCAGGACAT 73 75 581 Antisense
TATGGTGAACCCGCGATTGATGATG 644 653 643 Antisense
AATTCTTCACTTGGCTCATATGTAC 297 177 681 Antisense
TATGTACGACATGTCTGTTCCGCTT 686 655 699 Antisense
CATGTCTGTTCCGCTTCGAAAATGC 349 209 708 Antisense
GAAGTTGAAGAAAGCTTGTCTCCTG 531 337 807 Antisense
TGAGATCAAAGCGGCCGTGGCTGGC 562 567 849 Antisense
Sequence Source Affymetrix Proprietary Database