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[181609_at]

Description T05C12.8 /REP_DB=WormBase Gene ID /WP=CE02320 /TR=Q22229 /GB=CAA91309.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 70      6grp_total > 27      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 315
1 2 3 4 range
A 494.9
(3)
P 		244.3
(-2.2)
P 		204.7
(-3)
P 		489.6
(2.9)
P 		290
B 475.5
(2.4)
P 		287.2
(-1.6)
P 		219
(-3)
P 		506.6
(3)
P 		288
C 494.7
(2.7)
P 		300.7
(-1)
P 		196
(-3)
P 		510.8
(3)
P 		315
avr 488.4
(2.7) 		277.4
(-1.6) 		206.6
(-3) 		502.3
(3) 		296

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 401.1
(3)
P 		344.9
(1.4)
P 		184.9
(-3)
P 		183.9
(-3)
P 		195.3
(-2.7)
P 		237.3
(-1.5)
P 		217
B 396.5
(3)
P 		240.7
(-0.8)
P 		262.3
(-0.2)
P 		147.5
(-3)
P 		172.1
(-2.4)
P 		260.2
(-0.3)
P 		249
C 419.5
(3)
P 		306.1
(0.3)
P 		245.8
(-1.2)
P 		170.7
(-3)
P 		188.6
(-2.6)
P 		275.7
(-0.5)
P 		249
avr 405.7
(3) 		297.2
(0.3) 		231
(-1.4) 		167.4
(-3) 		185.3
(-2.5) 		257.7
(-0.7) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 180.2
(3)
P 		53
(-3)
P 		53.5
(-3)
P 		71.7
(-2.1)
P 		127
B 151.6
(3)
P 		70.9
(-1.8)
P 		50.7
(-3)
P 		108
(0.4)
P 		101
C 163.8
(3)
P 		86.5
(-1.9)
P 		68.3
(-3)
P 		86.1
(-1.9)
P 		96
avr 165.2
(3) 		70.1
(-2.3) 		57.5
(-3) 		88.6
(-1.3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 73.9
(-0.6)
P 		122.7
(3)
P 		40.3
(-3)
P 		46.6
(-2.5)
P 		58.9
(-1.6)
P 		57.8
(-1.7)
P 		82
B 138
(3)
P 		80.1
(-0.5)
P 		63.7
(-1.5)
P 		39.1
(-3)
P 		69.9
(-1.1)
P 		97
(0.5)
P 		99
C 155.5
(3)
P 		93.4
(-0.1)
P 		62.6
(-1.6)
P 		34.3
(-3)
P 		61
(-1.7)
P 		92.3
(-0.1)
P 		121
avr 122.5
(3) 		98.7
(1.3) 		55.5
(-1.9) 		40
(-3) 		63.3
(-1.3) 		82.4
(0.1) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2640
Sequence Type Exemplar sequence
Representative Public ID T05C12.8 NCBI
Target Description T05C12.8 /REP_DB=WormBase Gene ID /WP=CE02320 /TR=Q22229 /GB=CAA91309.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063322 NCBI Caenorhabditis elegans T05C12.8 (T05C12.8) mRNA, complete cds. 11/11 None
SNAP00000002115 ENSEMBL cdna:SNAP chromosome:CEL140:II:8187535:8190450:-1 11/11 None
GENEFINDER00000002123 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8187535:8189875:-1 11/11 None
T05C12.8 ENSEMBL cdna:known chromosome:CEL140:II:8187535:8189875:-1 gene:T05C12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8187531-8189872(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05C12.8
Entrez Gene 188124 Entrez gene
SwissProt Q22229 EMBL-EBI
WormBase CE02320 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91309 Hypothetical protein T05C12.8 [Caenorhabditis elegans] ref|NP_495723.1| T05C12.8 [Caenorhabditis elegans] 1.0E-167
blast CAE57712 Hypothetical protein CBG00720 [Caenorhabditis briggsae] 1.0E-158
blast CAE57712 Hypothetical protein CBG00720 [Caenorhabditis briggsae] 1.0E-129
Sequence
Target Sequence 
>C. ELEGANS:181609_AT
ggcttctgggcatgcagttgcaactaaaaagctgagccgagagaaaatctcgaatagttt
ggcgaagggcaatgtagctgcagtccaaggacgagaatatcttaaaatggtgaaaaggtc
atcatctgctcactcaagattaatgtctcaacgtacattctctgtggaatccggatcaat
tgactcatctgagccatcaactccacaattgacatctccgccagctgatcatggagtttt
ttcgagtgttggggagaaaattagaaatattttcggaaagaagcctccacttcatacgaa
aagtctttccgttgttcaaacggatcgaattgcagcaccagctgtcagatcttcatcaat
ttccaacaaaccattgtcatatcaaaccagtggaaattcaaatgaggaggatcacttgag
acttccacaacactcatcatcatcggaatcgccaccatctgaaggtccatcgaatagtgg
attgttccgatggtcatcaaaggataaaccgatgaccagtactgtcagcactgctaatgg
tgtccgtctccctccactgagcctacgccgtcgtactaacagtgatccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTCTGGGCATGCAGTTGCAACT 652 537 342 Antisense
GTCATCATCTGCTCACTCAAGATTA 577 467 459 Antisense
GTCTCAACGTACATTCTCTGTGGAA 104 471 486 Antisense
TCAACTCCACAATTGACATCTCCGC 374 631 538 Antisense
ACATCTCCGCCAGCTGATCATGGAG 97 107 553 Antisense
AAACGGATCGAATTGCAGCACCAGC 603 125 659 Antisense
CAGCACCAGCTGTCAGATCTTCATC 147 205 674 Antisense
GATCACTTGAGACTTCCACAACACT 600 421 751 Antisense
GCCACCATCTGAAGGTCCATCGAAT 105 279 792 Antisense
GTCAGCACTGCTAATGGTGTCCGTC 53 467 865 Antisense
ACGCCGTCGTACTAACAGTGATCCG 434 91 906 Antisense
Sequence Source Affymetrix Proprietary Database