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[181608_at]

Description Y48A6C.2 /REP_DB=WormBase Gene ID /WP=CE19197 /TR=Q9XWK7 /GB=CAA21652.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 12.4
(1.6)
A 		7.1
(-3)
A 		14
(3)
A 		9
(-1.3)
A 		7
B 8.5
(1.7)
A 		9.7
(2.7)
A 		2.7
(-3)
A 		10.1
(3)
A 		7
C 8.7
(-2.7)
A 		14.5
(-2.2)
A 		4.1
(-3)
A 		83.5
(3)
A 		79
avr 9.9
(-2.3) 		10.4
(-2.2) 		6.9
(-3) 		34.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.1
(-3)
A 		3.3
(-2.9)
A 		6.6
(-1.8)
A 		4.2
(-2.6)
A 		20.5
(3)
A 		4.5
(-2.5)
A 		17
B 2.4
(-2.7)
A 		6
(0.4)
A 		9.1
(3)
A 		2
(-3)
A 		6.6
(0.9)
A 		6.2
(0.5)
A 		7
C 4
(-2.3)
A 		17.6
(3)
A 		2.2
(-3)
A 		4.5
(-2.1)
A 		2.1
(-3)
A 		6.6
(-1.3)
A 		16
avr 3.2
(-3) 		9
(2.4) 		6
(-0.4) 		3.6
(-2.6) 		9.7
(3) 		5.8
(-0.6) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.5
(3)
A 		1.6
(-2.4)
A 		3.7
(1.5)
A 		1.3
(-3)
A 		3
B 2.7
(3)
A 		2.4
(2.1)
A 		0.6
(-3)
A 		2.1
(1.3)
A 		2
C 2.9
(-2.3)
A 		4.2
(-1.7)
A 		1.4
(-3)
A 		14.1
(3)
A 		13
avr 3.4
(-0.7) 		2.7
(-1.8) 		1.9
(-3) 		5.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.2
(-2.4)
A 		1.4
(-2.1)
A 		1.1
(-2.5)
A 		6.2
(3)
A 		1.1
(-2.5)
A 		6
B 0.8
(-2.2)
A 		2
(1.1)
A 		2.2
(1.6)
A 		0.5
(-3)
A 		2.7
(3)
A 		2.3
(1.9)
A 		2
C 1.5
(-1.9)
A 		5.4
(3)
A 		0.6
(-3)
A 		0.9
(-2.6)
A 		0.7
(-2.9)
A 		2.2
(-1)
A 		5
avr 1
(-2.5) 		2.9
(2.3) 		1.4
(-1.5) 		0.8
(-3) 		3.2
(3) 		1.9
(-0.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181608_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7153
Sequence Type Exemplar sequence
Representative Public ID Y48A6C.2 NCBI
Target Description Y48A6C.2 /REP_DB=WormBase Gene ID /WP=CE19197 /TR=Q9XWK7 /GB=CAA21652.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000028339 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11101145:11116099:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028335 1/11 Cross Hyb Matching Probes None
Y48A6C.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11107969-11116095(-) 76.77 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21651 Hypothetical protein Y48A6C.1 [Caenorhabditis elegans] ref|NP_499430.1| Y48A6C.1 [Caenorhabditis elegans] 0.0
blast CAA21653 Hypothetical protein Y48A6C.3 [Caenorhabditis elegans] ref|NP_499432.1| Y48A6C.3 [Caenorhabditis elegans] 1.0E-169
blast T26991 hypothetical protein Y48A6C.2 - Caenorhabditis elegans 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:181608_AT
tgtaataaggtgctagtctatcaaaaaattccaatttcacctttctaccgtagtccagcg
cgggaattcaaaattctcacgttccaccggtctcccttatcaatatatatatcatcctca
cggggttctggctcgacccccctctcgaaaattttggaaaatggcgggaaaaaatatttg
atctcgcaagaggaattttcacgcagcgcgttgaaaaagtgtatgcatttgcgcgtgacg
gtgtttgcacaaaatacaccgaggggtcgagccagaaccccgtgcatcctcccaatcact
ttcactgagaatgtgccaggaggctcgccacgtcagcttctaaataatcaacactatttg
gagcatcaagagcccccgcgtcaagcaattttcaacgcaactctccaaattcaacaggaa
atcaaaaacaacgaaaacggcggcatgatggcccccagtactgaggatcccgatacggtt
gtcgaggctcaacgtcgtggaagcttctcgaagaaaaagaacgcaaatgggtggaataag
gtcgaacttgtcgatcagtgtatttccggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTAATAAGGTGCTAGTCTATCAAA 30 559 76 Antisense
TTTCTACCGTAGTCCAGCGCGGGAA 106 671 117 Antisense
CCGTAGTCCAGCGCGGGAATTCAAA 229 251 123 Antisense
CACCGGTCTCCCTTATCAATATATA 439 201 160 Antisense
ATATATCATCCTCACGGGGTTCTGG 482 3 182 Antisense
ATTTGCGCGTGACGGTGTTTGCACA 644 17 302 Antisense
GTTTGCACAAAATACACCGAGGGGT 436 449 318 Antisense
ATACACCGAGGGGTCGAGCCAGAAC 510 23 329 Antisense
ATCACTTTCACTGAGAATGTGCCAG 210 27 370 Antisense
GGGTGGAATAAGGTCGAACTTGTCG 455 497 604 Antisense
ACTTGTCGATCAGTGTATTTCCGGC 238 105 621 Antisense
Sequence Source Affymetrix Proprietary Database