[Home] | [Total List]

[181606_at]

Description T10D4.7 /REP_DB=WormBase Gene ID /WP=CE20047 /TR=Q9TZF6 /GB=AAC68718.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 6.1
(-2.3)
A 		5.5
(-3)
A 		7.6
(-0.5)
A 		10.6
(3)
A 		5
B 30.2
(0.9)
A 		3.6
(-3)
A 		7.8
(-2.4)
A 		44.9
(3)
A 		41
C 7.7
(-2.8)
A 		7.2
(-2.8)
A 		2.7
(-3)
A 		123.2
(3)
A 		121
avr 14.7
(-2) 		5.4
(-3) 		6
(-2.9) 		59.6
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 4.8
(-1.3)
A 		2.9
(-3)
A 		8.6
(2.1)
A 		6.4
(0.1)
A 		9.6
(3)
A 		3.4
(-2.6)
A 		7
B 5.1
(-2.2)
A 		7.1
(-1)
A 		13.6
(3)
A 		5.5
(-2)
A 		3.8
(-3)
A 		6.3
(-1.5)
A 		10
C 4.1
(-2.7)
A 		8.5
(-1.9)
A 		4.9
(-2.5)
A 		13.4
(-1.1)
A 		2.2
(-3)
A 		37.6
(3)
A 		35
avr 4.7
(-3) 		6.2
(-2.2) 		9
(-0.7) 		8.4
(-1) 		5.2
(-2.7) 		15.8
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.2
(3)
A 		1.2
(-3)
A 		2
(1.8)
A 		1.5
(-1.2)
A 		1
B 9.6
(3)
A 		0.9
(-3)
A 		1.8
(-2.4)
A 		9.6
(3)
A 		9
C 2.6
(-2.5)
A 		2.1
(-2.6)
A 		0.9
(-3)
A 		20.8
(3)
A 		20
avr 4.8
(-0.8) 		1.4
(-3) 		1.6
(-2.9) 		10.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.9
(-2.7)
A 		1
(-2.4)
A 		1.9
(0.1)
A 		1.6
(-0.7)
A 		2.9
(3)
A 		0.8
(-3)
A 		2
B 1.8
(-1.7)
A 		2.4
(0.2)
A 		3.3
(3)
A 		1.4
(-3)
A 		1.6
(-2.4)
A 		2.3
(-0.2)
A 		2
C 1.5
(-2.6)
A 		2.6
(-2)
A 		1.3
(-2.7)
A 		2.7
(-2)
A 		0.7
(-3)
A 		12.6
(3)
A 		12
avr 1.4
(-3) 		2
(-2.1) 		2.2
(-1.7) 		1.9
(-2.2) 		1.7
(-2.5) 		5.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181606_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5399
Sequence Type Exemplar sequence
Representative Public ID T10D4.7 NCBI
Target Description T10D4.7 /REP_DB=WormBase Gene ID /WP=CE20047 /TR=Q9TZF6 /GB=AAC68718.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062050 NCBI Caenorhabditis elegans T10D4.7 (T10D4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000032475 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3117766:3118405:1 11/11 None
T10D4.7 ENSEMBL cdna:known chromosome:CEL140:II:3117766:3118336:1 gene:T10D4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032453 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3117764-3118335(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10D4.7
Entrez Gene 188381 Entrez gene
SwissProt Q9TZF6 EMBL-EBI
WormBase CE20047 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68718 Hypothetical protein T10D4.7 [Caenorhabditis elegans] ref|NP_494451.1| T10D4.7 [Caenorhabditis elegans] 4.0E-95
blast AAC68718 Hypothetical protein T10D4.7 [Caenorhabditis elegans] ref|NP_494451.1| T10D4.7 [Caenorhabditis elegans] 9.0E-94
blast AAC68715 Hypothetical protein T10D4.1 [Caenorhabditis elegans] ref|NP_494460.1| T10D4.1 [Caenorhabditis elegans] 7.0E-22
blast AAC68715 Hypothetical protein T10D4.1 [Caenorhabditis elegans] ref|NP_494460.1| T10D4.1 [Caenorhabditis elegans] 5.0E-21
blast AAG00001 Hypothetical protein R03H10.5 [Caenorhabditis elegans] ref|NP_494732.1| R03H10.5 [Caenorhabditis elegans] 1.0E-17
blast AAG00001 Hypothetical protein R03H10.5 [Caenorhabditis elegans] ref|NP_494732.1| R03H10.5 [Caenorhabditis elegans] 7.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 5.2E-11
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 7.6E-11
Sequence
Target Sequence 
>C. ELEGANS:181606_AT
cctattctcctagcggttttgatctacttggcctgttgtgaagaagattacggatgcctc
gatgcttgcgaatgtgacaatataagcgaatacacaattaatgatgcgtttttattttat
accgaagaggccggatgtgttaggaacgtgacgtgtctgaacagtccagattcgcatatt
gcactggattttcaaggatcggaaattccaagacctttggcgcctacatggaagccctac
cgtccagaaacctacctgatgcctccaaatgctactccgggatcaactcccactggaatc
gatattttttcatttttcggaataatttgtgagaacagcacttggtacatcacaaaatac
ccgaatggctactcgtaccaagtaaaagtcgacgagacgacaaacagaatagaatatgtc
gcacctgatagcacgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTATTCTCCTAGCGGTTTTGATCT 659 267 19 Antisense
TTTGATCTACTTGGCCTGTTGTGAA 12 669 36 Antisense
GAAGATTACGGATGCCTCGATGCTT 604 337 61 Antisense
GGAACGTGACGTGTCTGAACAGTCC 494 527 161 Antisense
TGAACAGTCCAGATTCGCATATTGC 196 573 176 Antisense
GAAATTCCAAGACCTTTGGCGCCTA 649 363 220 Antisense
CTACCGTCCAGAAACCTACCTGATG 459 223 255 Antisense
TACCTGATGCCTCCAAATGCTACTC 687 649 271 Antisense
GGATCAACTCCCACTGGAATCGATA 10 511 298 Antisense
ATACCCGAATGGCTACTCGTACCAA 261 23 375 Antisense
ATATGTCGCACCTGATAGCACGATT 70 21 432 Antisense
Sequence Source Affymetrix Proprietary Database