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[181605_at]

Description T02C12.3 /REP_DB=WormBase Gene ID /WP=CE01063 /TR=Q22093 /GB=CAA84675.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 45      4grp_high_8_8 > 0      6grp_highest_nonorm > 93      6grp_total > 68      4grp_total > 15      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 409.4
(3)
P 		264.4
(-3)
P 		317.1
(-0.8)
P 		373.2
(1.5)
P 		145
B 421.2
(3)
P 		269.9
(-3)
P 		327.7
(-0.7)
P 		401.9
(2.2)
P 		151
C 429.5
(3)
P 		272.8
(-3)
P 		345
(-0.2)
P 		418.8
(2.6)
P 		157
avr 420
(3) 		269
(-3) 		329.9
(-0.6) 		398
(2.1) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 398.8
(-2.3)
P 		361.1
(-3)
P 		444.5
(-1.5)
P 		375.6
(-2.7)
P 		444.4
(-1.5)
P 		694.7
(3)
P 		334
B 421.1
(-2.3)
P 		401.4
(-2.6)
P 		371.5
(-3)
P 		392.5
(-2.7)
P 		442.1
(-1.9)
P 		774.9
(3)
P 		403
C 369.7
(-2.1)
P 		390
(-1.8)
P 		302.6
(-3)
P 		335.9
(-2.6)
P 		389
(-1.8)
P 		747.5
(3)
P 		445
avr 396.5
(-2.5) 		384.2
(-2.7) 		372.9
(-2.9) 		368
(-3) 		425.2
(-2.1) 		739
(3) 		371
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 149.1
(3)
P 		57.4
(-2.8)
P 		82.9
(-1.2)
P 		54.6
(-3)
P 		95
B 134.3
(3)
P 		66.7
(-3)
P 		75.9
(-2.2)
P 		85.7
(-1.3)
P 		68
C 142.2
(3)
P 		78.4
(-2.3)
P 		120.2
(1.2)
P 		70.6
(-3)
P 		72
avr 141.9
(3) 		67.5
(-3) 		93
(-0.9) 		70.3
(-2.8) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 73.5
(-3)
P 		128.4
(0.4)
P 		96.8
(-1.5)
P 		95.3
(-1.6)
P 		134.1
(0.8)
P 		169.1
(3)
P 		96
B 146.5
(-1.3)
P 		133.6
(-1.7)
P 		90.2
(-3)
P 		104
(-2.6)
P 		179.6
(-0.3)
P 		289
(3)
P 		199
C 137
(-0.7)
P 		119
(-1.3)
P 		77
(-2.7)
P 		67.5
(-3)
P 		125.9
(-1.1)
P 		250.2
(3)
P 		183
avr 119
(-1.7) 		127
(-1.4) 		88
(-3) 		88.9
(-3) 		146.5
(-0.6) 		236.1
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181605_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7384
Sequence Type Exemplar sequence
Representative Public ID T02C12.3 NCBI
Target Description T02C12.3 /REP_DB=WormBase Gene ID /WP=CE01063 /TR=Q22093 /GB=CAA84675.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065407 NCBI Caenorhabditis elegans T02C12.3 (T02C12.3) mRNA, complete cds. 11/11 None
SNAP00000027337 ENSEMBL cdna:SNAP chromosome:CEL140:III:4022143:4025536:1 11/11 None
GENEFINDER00000027341 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4022143:4025536:1 11/11 None
T02C12.3 ENSEMBL cdna:known chromosome:CEL140:III:4022137:4025593:1 gene:T02C12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4022142-4025536(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02C12.3
Entrez Gene 175520 Entrez gene
SwissProt Q22093 EMBL-EBI
WormBase CE01063 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249735_AT transcription factor-related at
CANINE:1605253_AT similar to General transcription factor 3C polypeptide 5 (Transcription factor IIIC-epsilon subunit) (TF3C-epsilon) (TFIIIC 63 kDa subunit) (TFIIIC63) cfa
CANINE_2:CFA.19540.1.S1_AT similar to General transcription factor 3C polypeptide 5 (Transcription factor IIIC-epsilon subunit) (TF3C-epsilon) (TFIIIC 63 kDa subunit) (TFIIIC63) cfa
CANINE_2:CFAAFFX.30423.1.S1_AT similar to General transcription factor 3C polypeptide 5 (Transcription factor IIIC-epsilon subunit) (TF3C-epsilon) (TFIIIC 63 kDa subunit) (TFIIIC63) cfa
DROSOPHILA_2:1634729_AT dm
DROSGENOME1:152500_AT dm
CHICKEN:GGA.4366.1.S1_AT general transcription factor IIIC, polypeptide 5, 63kDa gga
CHICKEN:GGA.4366.2.S1_S_AT general transcription factor IIIC, polypeptide 5, 63kDa gga
CHICKEN:GGAAFFX.11683.1.S1_S_AT general transcription factor IIIC, polypeptide 5, 63kDa gga
HU35KSUBA:AA323096_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
HU35KSUBB:RC_W92935_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
HG-U133A:217876_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
HG-U133_PLUS_2:217876_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
HG-FOCUS:217876_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
HG-U133A_2:217876_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
U133_X3P:G6912401_3P_X_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
U133_X3P:G6912401_3P_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
U133_X3P:HS.286088.1.S1_3P_X_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
HG-U133_PLUS_2:233173_X_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
HG-U133B:233173_X_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
HG-U95C:65881_AT general transcription factor IIIC, polypeptide 5, 63kDa hs
MU11KSUBA:AA119553_S_AT general transcription factor IIIC, polypeptide 5 mm
MG-U74AV2:104561_AT general transcription factor IIIC, polypeptide 5 mm
MG-U74BV2:165221_AT general transcription factor IIIC, polypeptide 5 mm
MOE430A:1423998_AT general transcription factor IIIC, polypeptide 5 mm
MOUSE430A_2:1423998_AT general transcription factor IIIC, polypeptide 5 mm
MOUSE430_2:1423998_AT general transcription factor IIIC, polypeptide 5 mm
MU19KSUBC:TC35154_AT General transcription factor IIIC, polypeptide 5, mRNA (cDNA clone MGC:21419 IMAGE:4500799) mm
Protein Similarities
Method ID Description E-Value
blast CAA84675 Hypothetical protein T02C12.3 [Caenorhabditis elegans] ref|NP_497808.1| T02C12.3 [Caenorhabditis elegans] 0.0
blast CAE72881 Hypothetical protein CBG20194 [Caenorhabditis briggsae] 0.0
blast XP_342400 PREDICTED: similar to General transcription factor 3C polypeptide 5 (Transcription factor IIIC-epsilon subunit) (TF3C-epsilon) (TFIIIC 63 kDa subunit) (TFIIIC63) [Rattus norvegicus] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:181605_AT
gcaatgttccgttgcaaacacgatgaaccacataggcttcttcgagaattatttgatgaa
cgaccaatgtggacacgtatgggattgctttatcgaacgagaatagatgattcactgttg
agaagtattcttcaaaaatatgcattttatattctaagtggaccgtggggtcgattgtgg
tgcaaatttggatatgatccgagaactgatagaaatggaggattatatcaaacaataatg
gtctcattccgacaacatggaagtattccagaaagacaacgattgaaagtttcatctgat
agagcacagactattaatcatacagctgatgttagtgaaccagtcacctacatgtacgaa
ccaggaaaactgccacgtatccgtcaaatgtggtactgtgtaatggacgtacgtctacca
caagcaatgaatgagctagtggctgttgtagagaacaatacaccaccgacaccagaggaa
gtacgagacaagggatggctaccgaatacactattggaaaagattcgagatttgatcaaa
gaagacgtggcaagaacgtctgcagaactgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATGTTCCGTTGCAAACACGATG 655 321 700 Antisense
GATGAACCACATAGGCTTCTTCGAG 1 413 721 Antisense
GTGGACACGTATGGGATTGCTTTAT 154 491 768 Antisense
GGACCGTGGGGTCGATTGTGGTGCA 77 521 859 Antisense
AATGGTCTCATTCCGACAACATGGA 521 163 936 Antisense
TGAACCAGTCACCTACATGTACGAA 471 573 1035 Antisense
AACTGCCACGTATCCGTCAAATGTG 177 141 1067 Antisense
ATGGACGTACGTCTACCACAAGCAA 411 49 1102 Antisense
GTAGAGAACAATACACCACCGACAC 193 457 1147 Antisense
GGATGGCTACCGAATACACTATTGG 291 515 1192 Antisense
GTGGCAAGAACGTCTGCAGAACTGG 160 491 1246 Antisense
Sequence Source Affymetrix Proprietary Database