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[181604_at]

Description Y43F4B.7 /REP_DB=WormBase Gene ID /WP=CE16632 /TR=O45936 /GB=CAA16336.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 20      4grp_high_8_8 > 23      6grp_highest_nonorm > 74      6grp_total > 90      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 461.8
(-2.7)
P 		453.6
(-3)
P 		626.4
(3)
P 		605.4
(2.3)
P 		173
B 470.1
(-1.2)
P 		421.6
(-3)
P 		505.7
(0)
P 		587.6
(3)
P 		166
C 451.9
(-3)
P 		546.7
(0.8)
P 		552.2
(1)
P 		601.4
(3)
P 		150
avr 461.3
(-3) 		474
(-2.4) 		561.4
(1.4) 		598.1
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 660.1
(1.4)
P 		619.8
(-1.8)
P 		604.7
(-3)
P 		681
(3)
P 		627.4
(-1.2)
P 		629
(-1.1)
P 		76
B 655.2
(2)
P 		573.4
(0.5)
P 		377.1
(-3)
P 		709.9
(3)
P 		649.6
(1.9)
P 		621.6
(1.4)
P 		333
C 653.6
(1.9)
P 		641.8
(1.3)
P 		675.6
(3)
P 		615.7
(-0)
P 		573.5
(-2.2)
P 		556.7
(-3)
P 		119
avr 656.3
(2.4) 		611.7
(0.1) 		552.5
(-3) 		668.9
(3) 		616.8
(0.3) 		602.4
(-0.4) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 168.1
(3)
P 		98.5
(-2.3)
P 		163.8
(2.7)
P 		88.6
(-3)
P 		80
B 149.9
(3)
P 		104.1
(-3)
P 		117.2
(-1.3)
P 		125.2
(-0.2)
P 		46
C 149.6
(0.2)
P 		157.2
(0.7)
P 		192.5
(3)
P 		101.4
(-3)
P 		91
avr 155.9
(2.8) 		119.9
(-1.3) 		157.8
(3) 		105.1
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 121.7
(-3)
P 		220.4
(3)
P 		131.7
(-2.4)
P 		172.7
(0.1)
P 		189.3
(1.1)
P 		153.2
(-1.1)
P 		99
B 228
(1.7)
P 		190.9
(0.5)
P 		91.6
(-3)
P 		188
(0.4)
P 		263.9
(3)
P 		231.8
(1.9)
P 		172
C 242.3
(3)
P 		195.8
(0.6)
P 		171.9
(-0.6)
P 		123.8
(-3)
P 		185.6
(0.1)
P 		186.4
(0.2)
P 		119
avr 197.3
(1.8) 		202.4
(2.2) 		131.7
(-3) 		161.5
(-0.8) 		212.9
(3) 		190.5
(1.3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6588
Sequence Type Exemplar sequence
Representative Public ID Y43F4B.7 NCBI
Target Description Y43F4B.7 /REP_DB=WormBase Gene ID /WP=CE16632 /TR=O45936 /GB=CAA16336.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171234, NM_067342
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067342 NCBI Caenorhabditis elegans Y43F4B.7 (Y43F4B.7) mRNA, complete cds. None
SNAP00000007802 ENSEMBL cdna:SNAP chromosome:CEL140:III:13307024:13312666:1 None
GENEFINDER00000007813 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13307024:13312666:1 None
SNAP00000007803 ENSEMBL cdna:SNAP chromosome:CEL140:III:13313588:13314083:1 None
GENEFINDER00000007812 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13313588:13314083:1 None
Y43F4B.7 ENSEMBL cdna:known chromosome:CEL140:III:13307018:13312879:1 gene:Y43F4B.7 None
Y43F4B.10 ENSEMBL cdna:known chromosome:CEL140:III:13313584:13314237:1 gene:Y43F4B.10 None
NM_171234 NCBI Caenorhabditis elegans Y43F4B.10 (Y43F4B.10) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13307019-13314079(+) 99.95 100.0
Public Domain and Genome References
Gene Title

Ensembl Y43F4B.7
Y43F4B.10
Entrez Gene 176752 Entrez gene
259544 Entrez gene
SwissProt Q8MPP5 EMBL-EBI
O45936 EMBL-EBI
WormBase CE30838 Wormbase
CE30839 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16594_AT amino acid transporter family protein at
ATH1-121501:258729_AT amino acid transporter family protein at
CANINE_2:CFAAFFX.27385.1.S1_AT similar to solute carrier family 36 member 1 cfa
DROSOPHILA_2:1631237_S_AT dm
DROSGENOME1:141633_AT dm
CHICKEN:GGA.6562.1.A1_X_AT similar to truncated transmembrane transport protein gga
CHICKEN:GGAAFFX.2712.1.S1_AT similar to truncated transmembrane transport protein gga
CHICKEN:GGAAFFX.2712.2.S1_AT similar to truncated transmembrane transport protein gga
CHICKEN:GGAAFFX.2712.2.S1_S_AT similar to truncated transmembrane transport protein gga
HU35KSUBB:RC_W15535_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
HU35KSUBD:RC_T99196_S_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
U133_X3P:HS2.146612.1.S1_3P_X_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
U133_X3P:HS2.146612.1.S1_3P_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
U133_X3P:HS.18593.0.A1_3P_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U133_PLUS_2:1553272_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U133A_2:213119_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U133_PLUS_2:213119_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U133A:213119_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U95AV2:40923_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U95C:66058_R_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U95D:80203_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U95D:80205_AT solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U95AV2:40922_AT Solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U133_PLUS_2:242619_X_AT Solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U133B:242619_X_AT Solute carrier family 36 (proton/amino acid symporter), member 1 hs
HG-U95C:60163_R_AT Solute carrier family 36 (proton/amino acid symporter), member 1 hs
HU35KSUBC:RC_W93147_AT Solute carrier family 36 (proton/amino acid symporter), member 1 hs
U133_X3P:HS.269004.0.A1_3P_X_AT Solute carrier family 36 (proton/amino acid symporter), member 1 hs
MG-U74BV2:115932_AT solute carrier family 36 (proton/amino acid symporter), member 1 mm
MOE430B:1428793_AT solute carrier family 36 (proton/amino acid symporter), member 1 mm
MOUSE430_2:1428793_AT solute carrier family 36 (proton/amino acid symporter), member 1 mm
MU19KSUBA:TC17181_AT Solute carrier family 36 (proton/amino acid symporter), member 1 (Slc36a1), mRNA mm
RAE230A:1369176_AT solute carrier family 36 (proton/amino acid symporter), member 1 rn
RAT230_2:1369176_AT solute carrier family 36 (proton/amino acid symporter), member 1 rn
YEAST_2:1772772_AT Vacuolar transporter, exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6865 amino acid transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5279 amino acid-polyamine transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16336 Hypothetical protein Y43F4B.7 [Caenorhabditis elegans] ref|NP_499743.2| Y43F4B.7 [Caenorhabditis elegans] 0.0
blast CAE56553 Hypothetical protein CBG24287 [Caenorhabditis briggsae] 0.0
blast NP_493751 T27A1.5 [Caenorhabditis elegans] gb|AAB71045.1| Hypothetical protein T27A1.5 [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 4.0E-102
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 3.0E-40
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 1.2E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499743.2 10 80-102,143-162,177-196,203-225,245-267,280-302,322-344,365-383,387-409,429-451
Y43F4B.7 10 80-102,143-162,177-196,203-225,245-267,280-302,322-344,365-383,387-409,429-451
SNAP00000007802 10 53-75,116-135,150-169,176-198,218-235,248-270,274-296,317-336,340-362,382-404
GENEFINDER00000007813 10 80-102,143-162,177-196,203-225,245-267,280-302,322-344,365-383,387-409,429-451
Sequence
Target Sequence 
>C. ELEGANS:181604_AT
tccctccgtgcattgaacttttgacatcctacgcgaaaaacgagttgagcactggattat
ggatcaaaaatatcgttcttctcacttttgcctttattggattcacaacgggaacctata
ctggaaattcccagaattttattgcacctttatggaattttttggaatttttttttgtat
atttcgtgtccttccttgtcggttgttcaatttgtgatgatgattttttcatatttttgc
ggcatttttttttcattttcgtttcattcccgaataacataaaaatggcgacacaagaag
atcttcaaacgcttatctcaattgtgccgaatcttcagatgcaagaaggcactccttatt
acgaagttctgctcaagttgatcgaagaaatcgggaaagacgttcgtccaacatatacat
tcaataagttgacctgtgaacggttgaagaggaatattcaagcggcaaaagttctgatta
gagcgtgtcaacaagaggccgaaacagacaaaaaaaaggcagacgctgcgatcgaagcac
aaagagttgcgcagaaatcagagactccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTCCGTGCATTGAACTTTTGAC 26 597 1226 Antisense
TTGAACTTTTGACATCCTACGCGAA 135 703 1238 Antisense
TCTTCTCACTTTTGCCTTTATTGGA 160 617 1302 Antisense
TTCCCAGAATTTTATTGCACCTTTA 606 697 1353 Antisense
TCCTTCCTTGTCGGTTGTTCAATTT 54 275 1414 Antisense
TTTCATTTTCGTTTCATTCCCGAAT 260 673 1476 Antisense
AACGCTTATCTCAATTGTGCCGAAT 549 145 1533 Antisense
GGCACTCCTTATTACGAAGTTCTGC 673 535 1573 Antisense
GACGTTCGTCCAACATATACATTCA 633 377 1624 Antisense
GGCAGACGCTGCGATCGAAGCACAA 312 535 1743 Antisense
GTTGCGCAGAAATCAGAGACTCCGA 56 441 1771 Antisense
Sequence Source Affymetrix Proprietary Database