[Home] | [Total List]

[181602_at]

Description F13H8.6 /REP_DB=WormBase Gene ID /WP=CE02640 /TR=Q19436 /GB=AAK31487.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 38.8
(-2.8)
A 		35.8
(-3)
A 		35.6
(-3)
A 		125.1
(3)
P 		90
B 80.5
(3)
P 		5.8
(-3)
A 		23.4
(-1.6)
A 		80.3
(3)
P 		75
C 58.5
(0.1)
P 		4.1
(-3)
A 		8.6
(-2.7)
A 		110.9
(3)
P 		107
avr 59.3
(-0.1) 		15.2
(-3) 		22.5
(-2.5) 		105.4
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 98.9
(3)
P 		64.8
(0.1)
A 		48.4
(-1.3)
P 		58.5
(-0.5)
P 		39.3
(-2.1)
A 		29.2
(-3)
A 		70
B 80.3
(3)
P 		56.1
(-0.1)
P 		75.9
(2.4)
P 		47.9
(-1.2)
P 		59.7
(0.4)
A 		33.6
(-3)
A 		47
C 48.4
(1)
P 		55.8
(2.5)
P 		27.4
(-3)
A 		49
(1.2)
A 		58.6
(3)
P 		28.8
(-2.7)
A 		31
avr 75.9
(3) 		58.9
(0.8) 		50.6
(-0.3) 		51.8
(-0.2) 		52.5
(-0.1) 		30.5
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 14.1
(0.6)
A 		7.8
(-3)
A 		9.3
(-2.1)
A 		18.3
(3)
P 		11
B 25.7
(3)
P 		1.4
(-3)
A 		5.4
(-2)
A 		17.1
(0.9)
P 		24
C 19.3
(3)
P 		1.2
(-3)
A 		3
(-2.4)
A 		18.7
(2.8)
P 		18
avr 19.7
(3) 		3.5
(-3) 		5.9
(-2.1) 		18
(2.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 18.2
(1.2)
P 		23
(3)
A 		10.6
(-1.7)
P 		14.8
(-0.1)
P 		11.9
(-1.2)
A 		7.1
(-3)
A 		16
B 27.9
(3)
P 		18.7
(-0.6)
P 		18.4
(-0.7)
P 		12.7
(-2.9)
P 		24.3
(1.6)
A 		12.5
(-3)
A 		15
C 18
(2.5)
P 		17
(2)
P 		7
(-3)
A 		9.8
(-1.6)
A 		19
(3)
P 		9.7
(-1.7)
A 		12
avr 21.4
(3) 		19.6
(2.1) 		12
(-1.9) 		12.4
(-1.7) 		18.4
(1.4) 		9.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5396
Sequence Type Exemplar sequence
Representative Public ID F13H8.6 NCBI
Target Description F13H8.6 /REP_DB=WormBase Gene ID /WP=CE02640 /TR=Q19436 /GB=AAK31487.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062859(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062859 NCBI Caenorhabditis elegans F13H8.6 (F13H8.6) mRNA, complete cds. 11/11 None
SNAP00000031310 ENSEMBL cdna:SNAP chromosome:CEL140:II:6284880:6286817:-1 11/11 None
GENEFINDER00000031317 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6284835:6286775:-1 11/11 None
F13H8.6 ENSEMBL cdna:known chromosome:CEL140:II:6284880:6286817:-1 gene:F13H8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6284876-6286814(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13H8.6
Entrez Gene 184438 Entrez gene
SwissProt Q19436 EMBL-EBI
WormBase CE02640 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31487 Hypothetical protein F13H8.6 [Caenorhabditis elegans] ref|NP_495260.1| F13H8.6 [Caenorhabditis elegans] 1.0E-161
blast AAK31487 Hypothetical protein F13H8.6 [Caenorhabditis elegans] ref|NP_495260.1| F13H8.6 [Caenorhabditis elegans] 1.0E-149
blast CAE59283 Hypothetical protein CBG02616 [Caenorhabditis briggsae] 1.0E-123
blast CAE59283 Hypothetical protein CBG02616 [Caenorhabditis briggsae] 1.0E-115
Sequence
Target Sequence 
>C. ELEGANS:181602_AT
taagtcatgtcgttagtctcggaaacgatttgccactggctgtaagtgtcactagacggg
atgggcatcttgtaatgattcctctcactttgtttcatgaaactgatgtggatccagttc
aaccgtttaagaacctctctgcaaagtttgacaacgtcaacttgttcattgagaacgctc
gtaaaatatctcaaaaagttgtcatctacagtaaaaatcgccaatgggcatactttgtag
cggctcagtataacgtggattactacgagttggagccagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGTCATGTCGTTAGTCTCGGAAA 562 637 473 Antisense
GTCTCGGAAACGATTTGCCACTGGC 207 471 488 Antisense
TGCCACTGGCTGTAAGTGTCACTAG 415 585 503 Antisense
GTGTCACTAGACGGGATGGGCATCT 487 483 518 Antisense
GGGCATCTTGTAATGATTCCTCTCA 527 493 535 Antisense
ATTCCTCTCACTTTGTTTCATGAAA 236 9 550 Antisense
ATGTGGATCCAGTTCAACCGTTTAA 606 47 578 Antisense
CAACCGTTTAAGAACCTCTCTGCAA 338 187 592 Antisense
ATGGGCATACTTTGTAGCGGCTCAG 454 49 696 Antisense
GTAGCGGCTCAGTATAACGTGGATT 111 457 709 Antisense
GGATTACTACGAGTTGGAGCCAGGA 532 509 729 Antisense
Sequence Source Affymetrix Proprietary Database