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[181601_at]

Description C50E3.7 /REP_DB=WormBase Gene ID /WP=CE08900 /TR=Q22927 /GB=AAB04882.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 36.1
(-0.1)
A 		5
(-3)
A 		49.8
(1.1)
A 		70.2
(3)
A 		65
B 68.9
(2.6)
A 		53.8
(-0)
A 		36.3
(-3)
A 		71.4
(3)
A 		35
C 49.8
(-0.9)
A 		86
(3)
A 		30.2
(-3)
A 		78.1
(2.2)
A 		56
avr 51.6
(-0.8) 		48.3
(-1.3) 		38.8
(-3) 		73.2
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 18.6
(-2.4)
A 		92.6
(3)
A 		10.9
(-3)
A 		63.3
(0.8)
A 		51.7
(-0)
A 		36.6
(-1.1)
A 		82
B 81.8
(3)
A 		81.9
(3)
A 		31.6
(-1.3)
A 		12.1
(-3)
A 		43.7
(-0.3)
A 		27.1
(-1.7)
A 		70
C 58.4
(3)
A 		28.3
(-0.5)
A 		27.6
(-0.6)
A 		47.4
(1.7)
A 		7.1
(-3)
A 		48.3
(1.8)
A 		51
avr 52.9
(1) 		67.6
(3) 		23.4
(-3) 		40.9
(-0.6) 		34.2
(-1.5) 		37.3
(-1.1) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 13.2
(3)
A 		1.1
(-3)
A 		13
(2.9)
A 		10.3
(1.6)
A 		12
B 22
(3)
A 		13.3
(-0.8)
A 		8.4
(-3)
A 		15.2
(-0)
A 		14
C 16.5
(-0.5)
A 		24.7
(3)
A 		10.5
(-3)
A 		13.2
(-1.9)
A 		14
avr 17.2
(3) 		13
(-0.8) 		10.6
(-3) 		12.9
(-0.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.4
(-2.8)
A 		32.9
(3)
A 		2.4
(-3)
A 		16
(-0.3)
A 		15.6
(-0.4)
A 		8.9
(-1.7)
A 		31
B 28.5
(3)
A 		27.3
(2.7)
A 		7.7
(-1.9)
A 		3.2
(-3)
A 		17.7
(0.4)
A 		10.1
(-1.4)
A 		25
C 21.7
(3)
A 		8.6
(-1.1)
A 		7
(-1.5)
A 		9.5
(-0.8)
A 		2.3
(-3)
A 		16.2
(1.3)
A 		19
avr 17.9
(1.3) 		22.9
(3) 		5.7
(-3) 		9.6
(-1.6) 		11.9
(-0.8) 		11.7
(-0.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11557
Sequence Type Exemplar sequence
Representative Public ID C50E3.7 NCBI
Target Description C50E3.7 /REP_DB=WormBase Gene ID /WP=CE08900 /TR=Q22927 /GB=AAB04882.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072559 NCBI Caenorhabditis elegans C50E3.7 (C50E3.7) mRNA, complete cds. 11/11 None
SNAP00000028532 ENSEMBL cdna:SNAP chromosome:CEL140:V:7597345:7598914:-1 11/11 None
GENEFINDER00000028553 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7597345:7600961:-1 11/11 None
C50E3.7 ENSEMBL cdna:known chromosome:CEL140:V:7597467:7599001:-1 gene:C50E3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7597467-7599002(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E3.7
Entrez Gene 183659 Entrez gene
SwissProt Q22927 EMBL-EBI
WormBase CE08900 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 1.0E-174
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 1.0E-151
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 1.0E-128
blast CAA22112 Hypothetical protein Y75B8A.34 [Caenorhabditis elegans] ref|NP_499606.1| Y75B8A.34 [Caenorhabditis elegans] 3.0E-66
blast CAA22112 Hypothetical protein Y75B8A.34 [Caenorhabditis elegans] ref|NP_499606.1| Y75B8A.34 [Caenorhabditis elegans] 4.0E-64
blast CAA22112 Hypothetical protein Y75B8A.34 [Caenorhabditis elegans] ref|NP_499606.1| Y75B8A.34 [Caenorhabditis elegans] 2.0E-54
blast CAE58058 Hypothetical protein CBG01137 [Caenorhabditis briggsae] 4.0E-45
blast CAE58058 Hypothetical protein CBG01137 [Caenorhabditis briggsae] 3.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504960.1 6 15-37,120-142,166-188,200-222,245-267,288-310
C50E3.7 6 15-37,120-142,166-188,200-222,245-267,288-310
SNAP00000028532 7 48-70,91-113,137-159,171-193,216-238,259-277,292-314
GENEFINDER00000028553 7 50-72,93-115,139-161,173-195,218-240,261-279,294-316
Sequence
Target Sequence 
>C. ELEGANS:181601_AT
aatccttctgatacaatgcttcgttgtttcacttcgtgtattcttacatattcttacaat
ttgcatcataatctatgtatcaaataccgaatcgtcagtgagcaagtttctaagtcaatg
ctccctctacgtggattactgtagtaacttcttctcattaactgtcacctttcttatgtc
attgaatcgttgcttctgcttcgtgtcgtacacttggaatgcaagaattttcgacggaaa
aaacgtgatctacagtgtttcaatcggcgctgtgatatccattgttagcgcagttttgtg
tataattacttcccaaatacgacgcaacttcctgacgattacgggatttgttgatatggg
accagatattggatttaaagttttaatcaaccgattattcttcatcttcccgttcggctc
aattgcgtgctacgttattctattttttgttatacggaaacaaaatcagcaggctctcac
aaaaacttcaaacagaagccgaggagagcacaaggttttcgtccagcttctaattaccgc
tgttctttacggcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCTTCTGATACAATGCTTCGTT 12 169 360 Antisense
TGCTTCGTTGTTTCACTTCGTGTAT 457 579 376 Antisense
AAGTTTCTAAGTCAATGCTCCCTCT 242 157 463 Antisense
TGCTCCCTCTACGTGGATTACTGTA 4 581 478 Antisense
AACTGTCACCTTTCTTATGTCATTG 663 141 519 Antisense
GTCATTGAATCGTTGCTTCTGCTTC 93 469 537 Antisense
TCGGCGCTGTGATATCCATTGTTAG 572 607 623 Antisense
ATACGACGCAACTTCCTGACGATTA 658 23 676 Antisense
TTCGGCTCAATTGCGTGCTACGTTA 337 655 772 Antisense
TTTTCGTCCAGCTTCTAATTACCGC 501 677 875 Antisense
AATTACCGCTGTTCTTTACGGCATA 653 169 891 Antisense
Sequence Source Affymetrix Proprietary Database