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[181600_at]

Description F56C3.5 /REP_DB=WormBase Gene ID /WP=CE17896 /TR=O61755 /GB=AAC17002.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 06      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 38.6
(3)
A 		6.5
(-3)
A 		22.9
(0.1)
A 		22
(-0.1)
A 		32
B 2.9
(-3)
A 		8.9
(3)
A 		5
(-0.9)
A 		3.2
(-2.7)
A 		6
C 3.3
(-2.9)
A 		3.4
(-2.9)
A 		2.7
(-3)
A 		36.1
(3)
A 		33
avr 14.9
(0.7) 		6.3
(-3) 		10.2
(-1.3) 		20.4
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 25.9
(3)
A 		3.3
(-2.5)
A 		11
(-0.6)
A 		4.8
(-2.2)
A 		1.9
(-2.9)
A 		1.4
(-3)
A 		25
B 3.2
(2.5)
A 		1.5
(-1.4)
A 		2.6
(1.2)
A 		3.4
(3)
A 		1.6
(-1.2)
A 		0.8
(-3)
A 		3
C 22.7
(3)
A 		3.1
(-2.5)
A 		3.1
(-2.5)
A 		2.9
(-2.6)
A 		1.4
(-3)
A 		14.9
(0.8)
A 		21
avr 17.3
(3) 		2.6
(-2.6) 		5.6
(-1.5) 		3.7
(-2.2) 		1.6
(-3) 		5.7
(-1.4) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14
(3)
A 		1.4
(-3)
A 		6
(-0.8)
A 		3.2
(-2.1)
A 		13
B 0.9
(-2.2)
A 		2.2
(3)
A 		1.2
(-1)
A 		0.7
(-3)
A 		2
C 1.1
(-2.8)
A 		1
(-2.9)
A 		0.9
(-3)
A 		6.1
(3)
A 		5
avr 5.3
(3) 		1.5
(-3) 		2.7
(-1.1) 		3.3
(-0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.8
(3)
A 		1.2
(-1.8)
A 		2.4
(-0.2)
A 		1.2
(-1.8)
A 		0.6
(-2.6)
A 		0.3
(-3)
A 		5
B 1.1
(3)
A 		0.5
(-1.5)
A 		0.6
(-0.8)
A 		0.9
(1.5)
A 		0.6
(-0.8)
A 		0.3
(-3)
A 		1
C 8.4
(3)
A 		1
(-2.6)
A 		0.8
(-2.8)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		5
(0.4)
A 		8
avr 4.8
(3) 		0.9
(-2.6) 		1.3
(-2) 		0.9
(-2.6) 		0.6
(-3) 		1.9
(-1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181600_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18176
Sequence Type Exemplar sequence
Representative Public ID F56C3.5 NCBI
Target Description F56C3.5 /REP_DB=WormBase Gene ID /WP=CE17896 /TR=O61755 /GB=AAC17002.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075851 NCBI Caenorhabditis elegans F56C3.5 (F56C3.5) mRNA, complete cds. 11/11 None
GENEFINDER00000017318 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1359715:1363992:-1 11/11 None
SNAP00000017303 ENSEMBL cdna:SNAP chromosome:CEL140:X:1362944:1363992:-1 9/11 None
F56C3.5 ENSEMBL cdna:known chromosome:CEL140:X:1362811:1363992:-1 gene:F56C3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1362810-1363992(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C3.5
Entrez Gene 186364 Entrez gene
SwissProt O61755 EMBL-EBI
WormBase CE17896 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17003 Hypothetical protein F56C3.4 [Caenorhabditis elegans] ref|NP_508251.1| F56C3.4 [Caenorhabditis elegans] 1.0E-157
blast AAC17002 Hypothetical protein F56C3.5 [Caenorhabditis elegans] ref|NP_508252.1| F56C3.5 [Caenorhabditis elegans] 1.0E-119
blast AAC17002 Hypothetical protein F56C3.5 [Caenorhabditis elegans] ref|NP_508252.1| F56C3.5 [Caenorhabditis elegans] 1.0E-112
blast AAC17002 Hypothetical protein F56C3.5 [Caenorhabditis elegans] ref|NP_508252.1| F56C3.5 [Caenorhabditis elegans] 1.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508252.1 1 188-210
F56C3.5 1 188-210
GENEFINDER00000017318 1 280-299
Sequence
Target Sequence 
>C. ELEGANS:181600_AT
aacgacgtgccttggcagatcaagcaagagtgctgaggaaccagaaggccaagcttgatg
acctactggtgttgatccaaatcataccgtcgccggatcaagaaatcagaagggcttggt
cacaaaagcttgggattacaatggcatttaataaaataggtgttgatgatgcaccaaaac
aggacccaaaaatagttaaatgttcatctccatctccaacaagctttaaaatctctccat
cagatatgtacacaaatgctgaaaagatggcttcattttcaccgttcaaagaagagcaaa
agcttattcccgagcacaacgtttgccaaaatgtaaaaaaaatcttaacgacgtgggaaa
tggaagaggagtatcgtagccgaaactcaatccacaagttatttgtgagccgagccaaaa
agcatgaacgtcattgctctgaaaatatgggcccggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGACGTGCCTTGGCAGATCAAGC 69 145 89 Antisense
GCCAAGCTTGATGACCTACTGGTGT 706 277 136 Antisense
TCCAAATCATACCGTCGCCGGATCA 698 587 164 Antisense
GATGATGCACCAAAACAGGACCCAA 345 411 253 Antisense
GTTAAATGTTCATCTCCATCTCCAA 28 447 283 Antisense
CAACAAGCTTTAAAATCTCTCCATC 550 189 305 Antisense
AAAGATGGCTTCATTTTCACCGTTC 81 121 351 Antisense
GAGCAAAAGCTTATTCCCGAGCACA 85 391 382 Antisense
ATTCCCGAGCACAACGTTTGCCAAA 419 9 394 Antisense
ATCGTAGCCGAAACTCAATCCACAA 327 35 461 Antisense
TTGCTCTGAAAATATGGGCCCGGAA 458 697 522 Antisense
Sequence Source Affymetrix Proprietary Database