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[181599_at]

Description F58E1.9 /REP_DB=WormBase Gene ID /WP=CE11388 /TR=Q9TZG3 /GB=AAC67486.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 3.1
(-3)
A 		63
(3)
A 		17.1
(-1.6)
A 		35.7
(0.3)
A 		60
B 8.8
(0.6)
A 		3.7
(-2.2)
A 		2.3
(-3)
A 		13
(3)
A 		11
C 1.1
(-3)
A 		6.8
(-1.6)
A 		16.4
(0.7)
A 		25.9
(3)
A 		25
avr 4.3
(-3) 		24.5
(2.9) 		11.9
(-0.8) 		24.9
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 7.8
(3)
A 		1.2
(-3)
A 		3.5
(-0.9)
A 		1.3
(-2.9)
A 		5.3
(0.7)
A 		5.5
(0.9)
A 		7
B 2.9
(-3)
A 		8
(-0.4)
A 		6.4
(-1.2)
A 		14.6
(3)
A 		3.8
(-2.5)
A 		10.6
(0.9)
A 		12
C 3.5
(-3)
A 		23.7
(2.6)
A 		14.9
(0.1)
A 		8.4
(-1.7)
A 		9.3
(-1.4)
A 		25.3
(3)
A 		22
avr 4.7
(-3) 		11
(1.2) 		8.3
(-0.6) 		8.1
(-0.8) 		6.1
(-2.1) 		13.8
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.1
(-3)
A 		13.7
(3)
A 		4.5
(-1.4)
A 		5.2
(-1)
A 		13
B 2.8
(3)
A 		0.9
(-2)
A 		0.5
(-3)
A 		2.8
(3)
A 		2
C 0.4
(-3)
A 		1.9
(-1.3)
A 		5.7
(3)
A 		4.4
(1.5)
A 		5
avr 1.4
(-3) 		5.5
(3) 		3.6
(0.2) 		4.1
(1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.4
(2.1)
A 		0.4
(-2.5)
A 		0.8
(-0.7)
A 		0.3
(-3)
A 		1.6
(3)
A 		1.3
(1.6)
A 		1
B 1
(-3)
A 		2.7
(0.4)
A 		1.5
(-2)
A 		3.9
(2.8)
A 		1.5
(-2)
A 		4
(3)
A 		3
C 1.3
(-3)
A 		7.2
(1.9)
A 		3.8
(-0.9)
A 		1.7
(-2.7)
A 		3
(-1.6)
A 		8.5
(3)
A 		7
avr 1.2
(-3) 		3.4
(0.9) 		2
(-1.6) 		2
(-1.6) 		2
(-1.6) 		4.6
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5502
Sequence Type Exemplar sequence
Representative Public ID F58E1.9 NCBI
Target Description F58E1.9 /REP_DB=WormBase Gene ID /WP=CE11388 /TR=Q9TZG3 /GB=AAC67486.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061641 NCBI Caenorhabditis elegans F58E1.9 (F58E1.9) mRNA, complete cds. 11/11 None
GENEFINDER00000040843 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1685935:1689175:-1 11/11 None
F58E1.9 ENSEMBL cdna:known chromosome:CEL140:II:1688238:1689175:-1 gene:F58E1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1688236-1689174(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E1.9
Entrez Gene 186514 Entrez gene
SwissProt Q9TZG3 EMBL-EBI
WormBase CE11388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67486 Hypothetical protein F58E1.9 [Caenorhabditis elegans] ref|NP_494042.1| F58E1.9 [Caenorhabditis elegans] 1.0E-167
blast AAC67486 Hypothetical protein F58E1.9 [Caenorhabditis elegans] ref|NP_494042.1| F58E1.9 [Caenorhabditis elegans] 1.0E-158
blast AAC67477 Hypothetical protein F58E1.8 [Caenorhabditis elegans] ref|NP_494041.1| F58E1.8 [Caenorhabditis elegans] 1.0E-107
blast AAC67477 Hypothetical protein F58E1.8 [Caenorhabditis elegans] ref|NP_494041.1| F58E1.8 [Caenorhabditis elegans] 1.0E-104
blast AAB37917 Hypothetical protein ZC204.8 [Caenorhabditis elegans] ref|NP_494023.1| ZC204.8 [Caenorhabditis elegans] 5.0E-50
blast CAB60508 Hypothetical protein Y56A3A.14 [Caenorhabditis elegans] ref|NP_499546.1| Y56A3A.14 [Caenorhabditis elegans] 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.3E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.0E-5
Sequence
Target Sequence 
>C. ELEGANS:181599_AT
ggatccctatcaagactaaatctgccaggatttaccgaaaaacaatggatcgaacatttt
gctaatgtattcattcaaaacaaaaaagttatgttaatcagcgacctaggggaaagaaaa
atcgaagacatctatgagtctatcaaagatcttaacatcgtcacactggatataatgacc
tctgaatttcaagactgcaagctttttaagctgttccctacactagaagaattgggagtt
tccgagactccactaagtgctccaatctttgttcagaattttcagagtcttactgcaatt
gatgtgacacttgacgatatattatcctcaaattgtaccaatttgtgcttagacgaccaa
cttatatccgataaagatctgaacatttttatgaggaattggattaaaggatctaaccct
cgtcttcgaaaactcacaaacacgtcagttcgacacgaacgggacataagtgattccgta
ttttttcgaggaatttctcaaattaaaaccagggactggtgcgacgaagatacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCCCTATCAAGACTAAATCTGC 245 513 271 Antisense
GTTATGTTAATCAGCGACCTAGGGG 622 265 358 Antisense
AGATCTTAACATCGTCACACTGGAT 595 65 417 Antisense
GCAAGCTTTTTAAGCTGTTCCCTAC 643 317 467 Antisense
GTTTCCGAGACTCCACTAAGTGCTC 90 451 508 Antisense
GTACCAATTTGTGCTTAGACGACCA 332 457 605 Antisense
TAGACGACCAACTTATATCCGATAA 452 651 620 Antisense
TTAAAGGATCTAACCCTCGTCTTCG 480 679 674 Antisense
CTCACAAACACGTCAGTTCGACACG 318 227 703 Antisense
TAAGTGATTCCGTATTTTTTCGAGG 293 635 737 Antisense
GGGACTGGTGCGACGAAGATACTTT 617 493 782 Antisense
Sequence Source Affymetrix Proprietary Database