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[181598_at]

Description F45E1.7 /REP_DB=WormBase Gene ID /WP=CE01944 /TR=Q09989 /GB=AAB04903.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_high_8_8 > 41      6grp_highest_nonorm > 71      6grp_total > 28      4grp_total > 47      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 411.4
(3)
P 		255.2
(-3)
A 		273
(-2.3)
A 		322.5
(-0.4)
P 		156
B 441.4
(3)
P 		284
(-3)
A 		339
(-0.9)
M 		377.1
(0.5)
P 		157
C 461.3
(3)
P 		368.2
(-0.1)
P 		366.7
(-0.2)
P 		282.8
(-3)
P 		179
avr 438
(3) 		302.5
(-3) 		326.2
(-2) 		327.5
(-1.9) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 420.5
(3)
P 		371.4
(1.5)
P 		219.3
(-3)
P 		415.3
(2.8)
P 		355
(1)
P 		302.5
(-0.5)
P 		201
B 372.9
(1.7)
P 		404
(3)
P 		382.8
(2.1)
P 		257
(-3)
P 		347.5
(0.7)
P 		324
(-0.3)
P 		147
C 396
(3)
P 		333.4
(-1.7)
P 		316
(-3)
P 		340.5
(-1.2)
P 		348.9
(-0.5)
P 		371.2
(1.1)
P 		80
avr 396.5
(3) 		369.6
(1.2) 		306
(-3) 		337.6
(-0.9) 		350.5
(-0) 		332.6
(-1.2) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 149.8
(3)
P 		55.4
(-2.5)
A 		71.4
(-1.6)
A 		47.2
(-3)
P 		103
B 140.8
(3)
P 		70.2
(-3)
A 		78.6
(-2.3)
M 		80.4
(-2.1)
P 		71
C 152.7
(3)
P 		105.9
(0.3)
P 		127.8
(1.6)
P 		47.7
(-3)
P 		105
avr 147.8
(3) 		77.2
(-1.7) 		92.6
(-0.7) 		58.4
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 77.5
(-0.9)
P 		132.1
(3)
P 		47.8
(-3)
P 		105.3
(1.1)
P 		107.1
(1.2)
P 		73.6
(-1.2)
P 		84
B 129.7
(2.1)
P 		134.5
(2.5)
P 		92.9
(-1)
P 		68.1
(-3)
P 		141.2
(3)
P 		120.8
(1.3)
P 		73
C 146.8
(3)
P 		101.7
(-0.5)
P 		80.4
(-2.1)
P 		68.5
(-3)
P 		112.9
(0.4)
P 		124.3
(1.3)
P 		78
avr 118
(2.4) 		122.8
(3) 		73.7
(-3) 		80.6
(-2.2) 		120.4
(2.7) 		106.2
(1) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16787
Sequence Type Exemplar sequence
Representative Public ID F45E1.7 NCBI
Target Description F45E1.7 /REP_DB=WormBase Gene ID /WP=CE01944 /TR=Q09989 /GB=AAB04903.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029494(11), NM_001029493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029494 NCBI Caenorhabditis elegans F45E1.7b (F45E1.7) mRNA, complete cds. 11/11 None
NM_001029493 NCBI Caenorhabditis elegans F45E1.7a (F45E1.7) mRNA, complete cds. 11/11 None
SNAP00000004150 ENSEMBL cdna:SNAP chromosome:CEL140:X:7989137:7990149:-1 11/11 None
GENEFINDER00000004156 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7989137:7992750:-1 11/11 None
F45E1.7b ENSEMBL cdna:known chromosome:CEL140:X:7988881:7998075:-1 gene:F45E1.7 11/11 None
F45E1.7a.1 ENSEMBL cdna:known chromosome:CEL140:X:7989137:7992751:-1 gene:F45E1.7 11/11 None
F45E1.7a.2 ENSEMBL cdna:known chromosome:CEL140:X:7989137:7992772:-1 gene:F45E1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7989225-7992749(-) 100.0 100.0
Public Domain and Genome References
Ensembl F45E1.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT92075 Hypothetical protein F45E1.7b [Caenorhabditis elegans] ref|NP_001024665.1| F45E1.7b [Caenorhabditis elegans] 0.0
blast AAB04903 Hypothetical protein F45E1.7a [Caenorhabditis elegans] ref|NP_001024664.1| F45E1.7a [Caenorhabditis elegans] 0.0
blast CAE70332 Hypothetical protein CBG16865 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 2.0E-18
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 4.6E-28
Pfam IPR001452 EMBL-EBI SH3 2.0E-18
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 4.6E-28
Pfam IPR001452 EMBL-EBI SH3 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:181598_AT
gatgcattttccgaatggccgagttttgtggaatactcgccggagattcgtaacattgct
gcacgtggtggatcgactaaagatgctggaggagtaattctcactagacaaataaacaga
agcgaagacattccatcaacacattccaacacattgccatcagttgctgtaaacactgct
tctagtcatgaagatgtcggaaagagtagcccaaagagtagcagtgaatccgatacaagc
acttttgacagccgaaaacataattctaccgctaataaatataagaatcaacctcaaaat
actacgcaaatccaaccaccgccagttggatggcatccatcagacggacccgactcccct
ccgttatctactgaaactccagactcggcaaaatatggagactttgaagagttcacaact
agtaagccagccgtagttctgtacgattacgcgccagcagaaggagatgagattgcactg
aggaaaggagaaatgatagaagtgctcacagaacctgattcgttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCATTTTCCGAATGGCCGAGTT 673 409 877 Antisense
GCCGGAGATTCGTAACATTGCTGCA 586 283 915 Antisense
CATTGCTGCACGTGGTGGATCGACT 73 217 930 Antisense
AACACATTCCAACACATTGCCATCA 676 135 1014 Antisense
GTTGCTGTAAACACTGCTTCTAGTC 354 439 1039 Antisense
AAATACTACGCAAATCCAACCACCG 672 115 1173 Antisense
ACCACCGCCAGTTGGATGGCATCCA 658 83 1191 Antisense
CCCTCCGTTATCTACTGAAACTCCA 188 257 1233 Antisense
GTAAGCCAGCCGTAGTTCTGTACGA 693 461 1298 Antisense
GTACGATTACGCGCCAGCAGAAGGA 376 459 1317 Antisense
GTGCTCACAGAACCTGATTCGTTGG 422 479 1378 Antisense
Sequence Source Affymetrix Proprietary Database