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[181597_at]

Description C04E6.4 /REP_DB=WormBase Gene ID /WP=CE07909 /TR=O01469 /GB=AAK39139.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 29.7
(0.4)
A 		10.1
(-3)
A 		44.4
(3)
A 		12.8
(-2.5)
A 		34
B 7.3
(-2.7)
A 		5.8
(-3)
A 		7.4
(-2.7)
A 		35.1
(3)
A 		29
C 29.5
(3)
A 		8.9
(-1.8)
A 		4
(-3)
A 		21.5
(1.1)
A 		26
avr 22.2
(2.6) 		8.3
(-3) 		18.6
(1.2) 		23.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 49.6
(3)
A 		10.5
(-2)
A 		2.8
(-3)
A 		7.1
(-2.4)
A 		34.6
(1.1)
A 		6.7
(-2.5)
A 		47
B 8.7
(-2.2)
A 		5.1
(-2.8)
A 		3.9
(-3)
A 		5.9
(-2.7)
A 		37.6
(2.5)
A 		40.5
(3)
A 		37
C 14.2
(-1.8)
A 		10.1
(-2.8)
A 		13.4
(-2)
A 		20.9
(-0.2)
A 		9.2
(-3)
A 		34.5
(3)
A 		25
avr 24.2
(2.1) 		8.6
(-2.4) 		6.7
(-3) 		11.3
(-1.7) 		27.1
(3) 		27.2
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.8
(2.5)
A 		2.2
(-2.8)
A 		11.6
(3)
A 		1.9
(-3)
A 		10
B 2.3
(-2.1)
A 		1.4
(-3)
A 		1.7
(-2.7)
A 		7.5
(3)
A 		6
C 9.8
(3)
A 		2.6
(-2.1)
A 		1.4
(-3)
A 		3.6
(-1.4)
A 		8
avr 7.6
(3) 		2.1
(-3) 		4.9
(0.1) 		4.3
(-0.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.1
(2.2)
A 		3.7
(-1.1)
A 		0.6
(-3)
A 		1.8
(-2.3)
A 		10.4
(3)
A 		1.6
(-2.4)
A 		10
B 3
(-2.1)
A 		1.7
(-2.7)
A 		0.9
(-3)
A 		1.6
(-2.7)
A 		15.3
(3)
A 		15.1
(2.9)
A 		14
C 5.3
(-1.4)
A 		3.1
(-2.9)
A 		3.4
(-2.7)
A 		4.2
(-2.2)
A 		3
(-3)
A 		11.6
(3)
A 		9
avr 5.8
(0.1) 		2.8
(-2.1) 		1.6
(-3) 		2.5
(-2.3) 		9.6
(3) 		9.4
(2.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12114
Sequence Type Exemplar sequence
Representative Public ID C04E6.4 NCBI
Target Description C04E6.4 /REP_DB=WormBase Gene ID /WP=CE07909 /TR=O01469 /GB=AAK39139.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072138(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072138 NCBI Caenorhabditis elegans C04E6.4 (C04E6.4) mRNA, complete cds. 9/11 None
SNAP00000001267 ENSEMBL cdna:SNAP chromosome:CEL140:V:5910002:5912216:1 11/11 None
C04E6.4 ENSEMBL cdna:known chromosome:CEL140:V:5910002:5912214:1 gene:C04E6.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001281 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5910001-5912216(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E6.4
Entrez Gene 182202 Entrez gene
SwissProt O01469 EMBL-EBI
WormBase CE35222 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39139 Hypothetical protein C04E6.4 [Caenorhabditis elegans] ref|NP_504539.2| C04E6.4 [Caenorhabditis elegans] 0.0
blast CAE67022 Hypothetical protein CBG12423 [Caenorhabditis briggsae] 3.0E-56
blast CAE67022 Hypothetical protein CBG12423 [Caenorhabditis briggsae] 8.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504539.2 1 292-314
C04E6.4 1 292-314
SNAP00000001267 1 292-314
Sequence
Target Sequence 
>C. ELEGANS:181597_AT
aatgcagttcgtggatctcgtggagctatcataatgggtcccatcgctggtgttctggtt
tttggaacaattttcatatgttggacgtctttgtcatacgagctcatagaagaacgaaaa
cctctcgaccctcaaaccttcaaattgaaagacatcgaattcgaactaaaaaaggcaatg
agtgataaacttcctgaaagaggttcgagtacgattcaagctgctgtcgatcttgaaaaa
gttaagctcgtcgatagaaaaagacagagaaggcacaggagtatagtctatccatctact
gtaccagttgttccaactccaccggttgaaaaatcagttcctagcaagacagagattaag
aagcgagaatctggggaaggcatggcacaaaaatcacttcaaaaaacccaaactccaagt
ccgagaccaaacgaactaattgctgtgatatcccatggatcccattccgcttacgccgaa
atctcagggctcaccttatccgaaacaatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCAGTTCGTGGATCTCGTGGAG 357 165 862 Antisense
GGAGCTATCATAATGGGTCCCATCG 16 521 883 Antisense
TCCCATCGCTGGTGTTCTGGTTTTT 628 595 900 Antisense
GGACGTCTTTGTCATACGAGCTCAT 169 525 944 Antisense
CTCGACCCTCAAACCTTCAAATTGA 407 229 985 Antisense
GTACGATTCAAGCTGCTGTCGATCT 191 459 1070 Antisense
ATAGTCTATCCATCTACTGTACCAG 52 23 1144 Antisense
ACTGTACCAGTTGTTCCAACTCCAC 153 95 1159 Antisense
TGTGATATCCCATGGATCCCATTCC 513 555 1305 Antisense
TACGCCGAAATCTCAGGGCTCACCT 264 647 1333 Antisense
GGCTCACCTTATCCGAAACAATCAA 21 539 1349 Antisense
Sequence Source Affymetrix Proprietary Database