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[181596_at] 7TM chemoreceptor, sra family

Description F18C5.6 /REP_DB=WormBase Gene ID /WP=CE02655 /TR=Q19550 /GB=AAA68415.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 10      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 4.1
(-3)
A 		26.6
(-0.8)
A 		12.1
(-2.2)
A 		64.1
(3)
A 		60
B 6.1
(-2.5)
A 		3.2
(-3)
A 		3.5
(-2.9)
A 		36.3
(3)
A 		33
C 23.2
(-2.3)
A 		16.4
(-2.6)
A 		5.8
(-3)
A 		155.8
(3)
A 		150
avr 11.1
(-2.7) 		15.4
(-2.4) 		7.1
(-3) 		85.4
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.3
(-2.3)
A 		7.9
(-2.1)
A 		27.2
(3)
A 		6.6
(-2.5)
A 		9.8
(-1.6)
A 		4.7
(-3)
A 		23
B 11.2
(-0.4)
A 		23.2
(3)
A 		10.7
(-0.5)
A 		4.3
(-2.3)
A 		8.3
(-1.2)
A 		1.8
(-3)
A 		21
C 4.6
(-2.3)
A 		4.9
(-2.2)
A 		5.3
(-2.1)
A 		21.1
(3)
A 		5.1
(-2.1)
A 		2.4
(-3)
A 		19
avr 7.7
(-0.5) 		12
(1.7) 		14.4
(3) 		10.7
(1.1) 		7.7
(-0.5) 		3
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 1.5
(-3)
A 		5.8
(0.3)
A 		3.2
(-1.7)
A 		9.4
(3)
A 		8
B 1.9
(-2)
A 		0.8
(-3)
A 		0.8
(-3)
A 		7.7
(3)
A 		7
C 7.7
(-1.6)
A 		4.7
(-2.3)
A 		2
(-3)
A 		26.3
(3)
A 		24
avr 3.7
(-2.2) 		3.8
(-2.1) 		2
(-3) 		14.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.3
(-2.8)
A 		2.8
(-0.9)
A 		5.9
(3)
A 		1.7
(-2.3)
A 		2.9
(-0.8)
A 		1.1
(-3)
A 		5
B 3.9
(-0.3)
A 		7.7
(3)
A 		2.6
(-1.4)
A 		1.1
(-2.7)
A 		3.4
(-0.7)
A 		0.7
(-3)
A 		7
C 1.7
(-1.4)
A 		1.5
(-1.8)
A 		1.3
(-2.1)
A 		4.2
(3)
A 		1.7
(-1.4)
A 		0.8
(-3)
A 		3
avr 2.3
(-0.3) 		4
(3) 		3.3
(1.6) 		2.3
(-0.3) 		2.7
(0.5) 		0.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181596_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4996
Sequence Type Exemplar sequence
Representative Public ID F18C5.6 NCBI
Target Description F18C5.6 /REP_DB=WormBase Gene ID /WP=CE02655 /TR=Q19550 /GB=AAA68415.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062928 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-28) (sra-28) mRNA, complete cds. 11/11 None
F18C5.6 ENSEMBL cdna:known chromosome:CEL140:II:6570654:6573722:-1 gene:F18C5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016663 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6570650-6573719(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-28
Ensembl F18C5.6
Entrez Gene 184634 Entrez gene
SwissProt Q19550 EMBL-EBI
WormBase CE02655 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68415 Serpentine receptor, class a (alpha) protein 28 [Caenorhabditis elegans] ref|NP_495329.1| Serpentine Receptor, class A (alpha) family member (sra-28) [Caenorhabditis elegans] sp|Q19550|SRA28_CAEEL Serpentine receptor class alpha-28 (Protein sra-28) 1.0E-165
blast AAA68414 Serpentine receptor, class a (alpha) protein 29 [Caenorhabditis elegans] ref|NP_495331.1| Serpentine Receptor, class A (alpha) family member (sra-29) [Caenorhabditis elegans] sp|Q19552|SRA29_CAEEL Serpentine receptor class alpha-29 (Protein sra-29) 3.0E-80
blast AAA68773 Serpentine receptor, class a (alpha) protein 31 [Caenorhabditis elegans] ref|NP_495332.2| Serpentine Receptor, class A (alpha) family member (sra-31) [Caenorhabditis elegans] sp|Q18881|SRA31_CAEEL Serpentine receptor class alpha-31 (Protein sra-31) 4.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 7.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495329.1 7 23-45,58-80,107-129,141-163,188-210,242-264,274-296
F18C5.6 7 23-45,58-80,107-129,141-163,188-210,242-264,274-296
Sequence
Target Sequence 
>C. ELEGANS:181596_AT
tcatcctatcacaaccatcagacactggcttctattgttcttatactatcacaaatcgta
cttccgattgggccgttgtactgggttttctatgatgcgttctataccagttacgtttta
atgtgcacatatcctcctccaatgtcggttatgaaattgcacgaagttaacaatattcgg
atatgtgttcttattgttttattgttttttgccatttttctatacattcataataagatt
cgcgagaaaagaatggtgcataatgtctacaatattaattctcgatacaagtcatacgaa
aactacttagccacaaaatccgtgtgcattgttattttctctcaaattttatgtgtcggc
ccgacttcttcaattacttctgtatttatccggttcagggactcaattccactagaatgg
tttcatttgattatttcatatttgacgggtctcacttattcaaacttccttcttcctctt
atcatactatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCCTATCACAACCATCAGACAC 365 621 409 Antisense
CAGACACTGGCTTCTATTGTTCTTA 319 205 427 Antisense
AATCGTACTTCCGATTGGGCCGTTG 590 167 462 Antisense
TGGGCCGTTGTACTGGGTTTTCTAT 307 553 477 Antisense
GATGCGTTCTATACCAGTTACGTTT 215 413 502 Antisense
GTGTGCATTGTTATTTTCTCTCAAA 705 487 730 Antisense
ATGTGTCGGCCCGACTTCTTCAATT 584 49 759 Antisense
ATTACTTCTGTATTTATCCGGTTCA 202 13 781 Antisense
TCCGGTTCAGGGACTCAATTCCACT 123 589 797 Antisense
GGGTCTCACTTATTCAAACTTCCTT 194 497 855 Antisense
CTTCTTCCTCTTATCATACTATATC 512 221 877 Antisense
Sequence Source Affymetrix Proprietary Database