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[181595_at]

Description F57B9.7 /REP_DB=WormBase Gene ID /WP=CE25014 /TR=Q20931 /GB=AAA21171.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 77      4grp_total > 22      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 147.8
(3)
P 		137.4
(-0.4)
P 		136.6
(-0.7)
P 		129.7
(-3)
P 		18
B 149.7
(2.6)
P 		129.1
(-3)
P 		131.2
(-2.4)
P 		151
(3)
P 		22
C 150.9
(-3)
P 		158.7
(-0.7)
P 		151.9
(-2.7)
P 		171.5
(3)
P 		21
avr 149.5
(2.3) 		141.7
(-2) 		139.9
(-3) 		150.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 133.9
(-3)
P 		135.4
(-2.8)
P 		155.1
(-0.7)
P 		149
(-1.3)
P 		136.3
(-2.7)
P 		188.5
(3)
P 		55
B 137.9
(-3)
P 		153.9
(-0.9)
P 		159.5
(-0.2)
P 		165.2
(0.6)
P 		174.1
(1.7)
P 		183.8
(3)
P 		46
C 178.5
(-0.5)
P 		162.4
(-2)
P 		151.9
(-3)
P 		154.8
(-2.7)
P 		166.5
(-1.7)
P 		216.9
(3)
P 		65
avr 150.1
(-3) 		150.6
(-2.9) 		155.5
(-2.3) 		156.3
(-2.2) 		159
(-1.8) 		196.4
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 53.8
(3)
P 		29.8
(-1.1)
P 		35.7
(-0.1)
P 		19
(-3)
P 		35
B 47.7
(3)
P 		31.9
(-2.5)
P 		30.4
(-3)
P 		32.2
(-2.4)
P 		17
C 49.9
(2.3)
P 		45.6
(1.2)
P 		52.9
(3)
P 		28.9
(-3)
P 		24
avr 50.5
(3) 		35.8
(-0.7) 		39.7
(0.3) 		26.7
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 24.7
(-3)
P 		48.2
(3)
P 		33.8
(-0.7)
P 		37.8
(0.3)
P 		41.1
(1.2)
P 		45.9
(2.4)
P 		24
B 48
(-1.3)
P 		51.2
(-0.7)
P 		38.7
(-3)
P 		43.8
(-2)
P 		70.7
(3)
P 		68.5
(2.6)
P 		32
C 66.2
(2.1)
P 		49.5
(-0.3)
P 		38.7
(-1.9)
P 		31.1
(-3)
P 		53.9
(0.3)
P 		72.6
(3)
P 		42
avr 46.3
(-0.8) 		49.6
(-0) 		37.1
(-3) 		37.6
(-2.9) 		55.2
(1.3) 		62.3
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181595_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7094
Sequence Type Exemplar sequence
Representative Public ID F57B9.7 NCBI
Target Description F57B9.7 /REP_DB=WormBase Gene ID /WP=CE25014 /TR=Q20931 /GB=AAA21171.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171178(11), NM_171879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171178 NCBI Caenorhabditis elegans F57B9.7a (F57B9.7) mRNA, complete cds. 11/11 A 
NM_171879 NCBI Caenorhabditis elegans F57B9.7b (F57B9.7) mRNA, complete cds. 11/11 A 
SNAP00000019895 ENSEMBL cdna:SNAP chromosome:CEL140:III:6924309:6928741:-1 11/11 None
GENEFINDER00000019909 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6924309:6928741:-1 11/11 None
F57B9.7a ENSEMBL cdna:known chromosome:CEL140:III:6924042:6928741:-1 gene:F57B9.7 11/11 A 
F57B9.7b ENSEMBL cdna:known chromosome:CEL140:III:6924309:6928746:-1 gene:F57B9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6927084-6928740(-) 100.0 100.0
Public Domain and Genome References
Ensembl F57B9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM48538 Hypothetical protein F57B9.7a [Caenorhabditis elegans] ref|NP_741207.1| F57B9.7a [Caenorhabditis elegans] 0.0
blast AAM48539 Hypothetical protein F57B9.7b [Caenorhabditis elegans] ref|NP_741208.1| F57B9.7b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181595_AT
atccagtggtcgccggcgacctatcacccgatcagaagccgaagaaagagcattagacaa
aatttccagagaggcggaagctcgaatgaaattgaaacgagaaacacgagaacaagcccg
acaaggaagatatcagttgttagaaaaaaaagttgaagaagatgcggaagcttatcgtca
tgatactgctgataaagtgatcgagctccaagatcgtgttcaacaagtcatgtttctata
ttctcaactggataatgagaaatcaacgttactttatgaggttgatcttctgaaagatga
acttgaagagaaggatgcatccttgaatttatcatctcgagaatgtcgtgatcttacgag
tgaagttaaagctttaaaacggaccatcgacgcgttacacgcttctcaacagcagctgaa
acaagaaatttcacagcgagatcagcttatacaggaaaatggtctatgtcttgtcgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCAGTGGTCGCCGGCGACCTATC 86 37 27 Antisense
CTATCACCCGATCAGAAGCCGAAGA 156 225 47 Antisense
GAAACACGAGAACAAGCCCGACAAG 41 357 127 Antisense
GATGCGGAAGCTTATCGTCATGATA 159 415 187 Antisense
GAGCTCCAAGATCGTGTTCAACAAG 307 387 229 Antisense
GTCATGTTTCTATATTCTCAACTGG 461 467 253 Antisense
GCATCCTTGAATTTATCATCTCGAG 549 309 343 Antisense
ATCTCGAGAATGTCGTGATCTTACG 491 31 360 Antisense
TAAAACGGACCATCGACGCGTTACA 425 637 401 Antisense
CACGCTTCTCAACAGCAGCTGAAAC 212 201 424 Antisense
GAAAATGGTCTATGTCTTGTCGAAG 374 353 481 Antisense
Sequence Source Affymetrix Proprietary Database