[Home] | [Total List]

[181594_at]

Description R11F4.3 /REP_DB=WormBase Gene ID /WP=CE04830 /TR=Q21941 /GB=AAA79751.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 41.6
(-2)
A 		124.3
(3)
A 		84.6
(0.6)
A 		24.8
(-3)
A 		100
B 17.7
(-3)
A 		114.3
(3)
A 		52.9
(-0.8)
A 		42.4
(-1.5)
A 		97
C 18.7
(-3)
A 		107.4
(2.3)
A 		119.5
(3)
A 		42.8
(-1.6)
A 		101
avr 26
(-3) 		115.3
(3) 		85.7
(1) 		36.7
(-2.3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 21.6
(-3)
A 		64.8
(0.1)
A 		44.7
(-1.4)
A 		83.7
(1.4)
A 		105.9
(3)
A 		56.3
(-0.5)
A 		84
B 31.4
(-3)
A 		123
(3)
A 		54.3
(-1.5)
A 		82.3
(0.3)
A 		80
(0.2)
A 		46.2
(-2)
A 		92
C 23.4
(-3)
A 		114.9
(2.7)
A 		77.4
(0.4)
A 		87.6
(1)
A 		119.9
(3)
A 		65.5
(-0.4)
A 		97
avr 25.5
(-3) 		100.9
(2.9) 		58.8
(-0.4) 		84.5
(1.6) 		101.9
(3) 		56
(-0.6) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 15.1
(-0.1)
A 		27
(3)
A 		22.1
(1.7)
A 		3.6
(-3)
A 		23
B 5.6
(-3)
A 		28.2
(3)
A 		12.2
(-1.2)
A 		9
(-2.1)
A 		23
C 6.2
(-3)
A 		30.9
(1.2)
A 		41.6
(3)
A 		7.2
(-2.8)
A 		35
avr 9
(-2.3) 		28.7
(3) 		25.3
(2.1) 		6.6
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4
(-3)
A 		23
(1.1)
A 		9.7
(-1.8)
A 		21.2
(0.7)
A 		32
(3)
A 		13.7
(-0.9)
A 		28
B 10.9
(-3)
A 		40.9
(3)
A 		13.2
(-2.5)
A 		21.8
(-0.8)
A 		32.5
(1.3)
A 		17.2
(-1.7)
A 		30
C 8.7
(-3)
A 		35
(2.2)
A 		19.7
(-0.8)
A 		17.6
(-1.2)
A 		38.8
(3)
A 		21.9
(-0.4)
A 		30
avr 7.9
(-3) 		33
(2.7) 		14.2
(-1.6) 		20.2
(-0.2) 		34.4
(3) 		17.6
(-0.8) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181594_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4147
Sequence Type Exemplar sequence
Representative Public ID R11F4.3 NCBI
Target Description R11F4.3 /REP_DB=WormBase Gene ID /WP=CE04830 /TR=Q21941 /GB=AAA79751.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062318 NCBI Caenorhabditis elegans R11F4.3 (R11F4.3) mRNA, complete cds. 11/11 None
SNAP00000009530 ENSEMBL cdna:SNAP chromosome:CEL140:II:4069862:4072681:1 11/11 None
GENEFINDER00000009537 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4070003:4072681:1 11/11 None
R11F4.3 ENSEMBL cdna:known chromosome:CEL140:II:4070003:4072914:1 gene:R11F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4070001-4072680(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11F4.3
Entrez Gene 187814 Entrez gene
SwissProt Q21941 EMBL-EBI
WormBase CE04830 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA79751 Hypothetical protein R11F4.3 [Caenorhabditis elegans] ref|NP_494719.1| R11F4.3 [Caenorhabditis elegans] 0.0
blast CAE71523 Hypothetical protein CBG18458 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181594_AT
aacatggcggatccaacagccgactgttcgtctgcagctgaagaggcttgtgatgcgaat
gcaaagtactgtgtcactaagcaaacacagatttctacaagttcatttgccatggagaag
agatgtttgtcggagattgatgcagctgttttcttgccaggggagaagctaaccgaagga
tgcgccacaagtgaaggtggtcttgtgaactactgtatttgtcggggaaacacatgtaat
cgaccgtcccttcttcagcaggctcagtcttcaggagtccgcgattccctcgaagagcag
cgtctaatggaagaacaaatccaaaaatcccaacgttttgccaattctctccaaacaaat
cgagtaccaaatcaagcgaacgtgggagttctcccaccaaatcatagccatgagaacaag
gaaaaaccaaaacttccgccagtttttctggatgaagatgattcgttggaggtcgcaaaa
gacgttcggactgaggatgacataattaaagaacggcaaagagaatgggcgagagccgga
gagacacgggcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATGGCGGATCCAACAGCCGACT 383 133 655 Antisense
GACTGTTCGTCTGCAGCTGAAGAGG 311 375 676 Antisense
TGATGCAGCTGTTTTCTTGCCAGGG 693 565 792 Antisense
GAAGGTGGTCTTGTGAACTACTGTA 29 335 847 Antisense
AAACACATGTAATCGACCGTCCCTT 201 129 882 Antisense
TCTTCAGCAGGCTCAGTCTTCAGGA 274 617 906 Antisense
GATTCCCTCGAAGAGCAGCGTCTAA 321 433 937 Antisense
CGTTTTGCCAATTCTCTCCAAACAA 452 247 988 Antisense
TTCTCCCACCAAATCATAGCCATGA 526 693 1043 Antisense
AAACTTCCGCCAGTTTTTCTGGATG 84 127 1084 Antisense
GCGAGAGCCGGAGAGACACGGGCGG 154 291 1183 Antisense
Sequence Source Affymetrix Proprietary Database