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[181593_at]

Description F52D2.7 /REP_DB=WormBase Gene ID /WP=CE23758 /TR=Q9TXM6 /GB=AAF02105.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 28      6grp_total > 59      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 90.6
(-3)
A 		132.5
(3)
P 		107.3
(-0.6)
A 		92.7
(-2.7)
A 		42
B 87.8
(-3)
P 		97.2
(-0.5)
A 		93.9
(-1.4)
P 		110.7
(3)
P 		23
C 91.6
(0.2)
P 		110.2
(3)
P 		82.9
(-1.1)
P 		69.9
(-3)
A 		40
avr 90
(-3) 		113.3
(3) 		94.7
(-1.8) 		91.1
(-2.7) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 89.8
(-0.4)
A 		78.9
(-1.4)
A 		62.1
(-3)
P 		78.7
(-1.4)
A 		72.7
(-2)
A 		125.6
(3)
P 		64
B 76.2
(0.3)
P 		75.6
(0.3)
P 		47
(-3)
A 		99.7
(3)
M 		98.2
(2.8)
P 		93.4
(2.3)
P 		53
C 128.5
(3)
P 		55.7
(-3)
A 		103.1
(0.9)
P 		102.3
(0.8)
A 		90.1
(-0.2)
P 		85.6
(-0.5)
P 		73
avr 98.2
(2.4) 		70.1
(-3) 		70.7
(-2.9) 		93.6
(1.5) 		87
(0.2) 		101.5
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 33
(3)
A 		28.8
(1.7)
P 		28.1
(1.5)
A 		13.6
(-3)
A 		19
B 28
(3)
P 		24
(-0.9)
A 		21.8
(-3)
P 		23.6
(-1.3)
P 		6
C 30.3
(2.6)
P 		31.7
(3)
P 		28.9
(2.2)
P 		11.8
(-3)
A 		20
avr 30.4
(3) 		28.2
(2.1) 		26.3
(1.3) 		16.3
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 16.6
(-1.9)
A 		28
(2.1)
A 		13.5
(-3)
P 		19.9
(-0.8)
A 		21.9
(-0.1)
A 		30.6
(3)
P 		17
B 26.5
(0.2)
P 		25.1
(-0.1)
P 		11.4
(-3)
A 		26.4
(0.2)
M 		39.9
(3)
P 		34.8
(1.9)
P 		29
C 47.6
(3)
P 		17
(-3)
A 		26.2
(-1.2)
P 		20.6
(-2.3)
A 		29.2
(-0.6)
P 		28.7
(-0.7)
P 		31
avr 30.2
(2.5) 		23.4
(-0.3) 		17
(-3) 		22.3
(-0.8) 		30.3
(2.5) 		31.4
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18422
Sequence Type Exemplar sequence
Representative Public ID F52D2.7 NCBI
Target Description F52D2.7 /REP_DB=WormBase Gene ID /WP=CE23758 /TR=Q9TXM6 /GB=AAF02105.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075961(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075961 NCBI Caenorhabditis elegans F52D2.7 (F52D2.7) mRNA, complete cds. 11/11 None
SNAP00000016855 ENSEMBL cdna:SNAP chromosome:CEL140:X:1962583:1965661:1 11/11 None
GENEFINDER00000016867 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1962583:1965661:1 11/11 None
F52D2.7.1 ENSEMBL cdna:known chromosome:CEL140:X:1962565:1966164:1 gene:F52D2.7 11/11 None
F52D2.7.2 ENSEMBL cdna:known chromosome:CEL140:X:1962567:1966164:1 gene:F52D2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1962582-1965661(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52D2.7
Entrez Gene 180508 Entrez gene
SwissProt Q9TXM6 EMBL-EBI
WormBase CE23758 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF02105 Hypothetical protein F52D2.7 [Caenorhabditis elegans] ref|NP_508362.1| F52D2.7 [Caenorhabditis elegans] 0.0
blast C89473 protein F52D2.7 [imported] - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:181593_AT
agaccttcgcgaatcagtgggctaagcacaacatgaatcgaggagaagatctggacgagg
gtggggacccgtggagacgacaatacgataccatggagttcatctccgctgcagctttca
tgacacaattcaaagcttatggattgagaaacaccgaatctgaattgatctctagtgaca
aaaggaaatcgaatattcgtgtgttccttccacgcagagaggtcgtaaagaaaccaaaac
gcatccatcacatgacacgaaagcttctggataaagctggagaaggtcttgacgggactg
ttgatgatgagcagttggatgaatcggctgagctggacaactcgtttaatgaggagagag
ccgaagcagctggagacgaagccgcagaagctccagagcaagagcttgctcaagaagctc
tcgaagcagctgatcctgatgagccatctacatccacggcgagaatcatcaagagacgag
ccagaaagtcggtgcctgcagcagctgaagagccgtctacttctggaactacatttcgtg
caaagagaactcgccatgagccaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACCTTCGCGAATCAGTGGGCTAA 76 69 497 Antisense
TACCATGGAGTTCATCTCCGCTGCA 363 649 585 Antisense
CGCTGCAGCTTTCATGACACAATTC 562 255 603 Antisense
TCGAATATTCGTGTGTTCCTTCCAC 265 593 685 Antisense
AAAACGCATCCATCACATGACACGA 364 131 732 Antisense
GAATCGGCTGAGCTGGACAACTCGT 465 329 817 Antisense
GAAGCTCTCGAAGCAGCTGATCCTG 141 343 910 Antisense
CTGATGAGCCATCTACATCCACGGC 55 239 932 Antisense
GACGAGCCAGAAAGTCGGTGCCTGC 221 375 971 Antisense
AGCCGTCTACTTCTGGAACTACATT 628 81 1007 Antisense
AAAGAGAACTCGCCATGAGCCAACC 707 121 1038 Antisense
Sequence Source Affymetrix Proprietary Database