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[181591_at]

Description F38E11.4 /REP_DB=WormBase Gene ID /WP=CE03296 /TR=Q20167 /GB=CAA92773.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 34      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 56
(-1.6)
A 		45.4
(-3)
A 		88.7
(2.6)
A 		92.2
(3)
P 		47
B 36.1
(-3)
A 		86.7
(3)
A 		50.9
(-1.2)
A 		48.1
(-1.6)
A 		51
C 47.5
(-3)
P 		107.4
(3)
A 		58.9
(-1.9)
A 		80.7
(0.3)
P 		60
avr 46.5
(-3) 		79.8
(3) 		66.2
(0.5) 		73.7
(1.9) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 56.1
(1.7)
A 		41.9
(0.4)
A 		70.3
(3)
A 		5.9
(-2.9)
A 		5.3
(-3)
A 		48.8
(1)
A 		65
B 10.9
(-3)
A 		48.7
(3)
A 		44.1
(2.3)
A 		39.5
(1.5)
A 		38.6
(1.4)
A 		21.8
(-1.3)
A 		38
C 29.2
(-0.8)
A 		72.2
(3)
P 		23.8
(-1.3)
A 		7.2
(-2.7)
A 		4.1
(-3)
A 		39.9
(0.2)
A 		68
avr 32.1
(-0.5) 		54.3
(3) 		46.1
(1.7) 		17.5
(-2.8) 		16
(-3) 		36.8
(0.3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 20.4
(1.7)
A 		9.9
(-3)
A 		23.2
(3)
A 		13.5
(-1.4)
P 		13
B 11.5
(-2.3)
A 		21.4
(3)
A 		11.8
(-2.1)
A 		10.2
(-3)
A 		11
C 15.7
(-2.3)
P 		30.9
(3)
A 		20.5
(-0.6)
A 		13.6
(-3)
P 		17
avr 15.9
(-0.5) 		20.7
(3) 		18.5
(1.4) 		12.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.3
(0.8)
A 		14.9
(2.8)
A 		15.3
(3)
A 		1.5
(-3)
A 		1.6
(-3)
A 		11.9
(1.5)
A 		14
B 3.8
(-3)
A 		16.2
(3)
A 		10.7
(0.3)
A 		10.5
(0.2)
A 		15.7
(2.8)
A 		8.1
(-0.9)
A 		12
C 10.8
(-0.2)
A 		22
(3)
P 		6.1
(-1.6)
A 		1.4
(-3)
A 		1.3
(-3)
A 		13.4
(0.5)
A 		21
avr 8.3
(-1.3) 		17.7
(3) 		10.7
(-0.2) 		4.5
(-3) 		6.2
(-2.2) 		11.1
(0) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181591_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8947
Sequence Type Exemplar sequence
Representative Public ID F38E11.4 NCBI
Target Description F38E11.4 /REP_DB=WormBase Gene ID /WP=CE03296 /TR=Q20167 /GB=CAA92773.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069269 NCBI Caenorhabditis elegans F38E11.4 (F38E11.4) mRNA, complete cds. 11/11 None
SNAP00000022712 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9453625:9457315:-1 11/11 None
GENEFINDER00000022726 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9453640:9459291:-1 11/11 None
F38E11.4 ENSEMBL cdna:known chromosome:CEL140:IV:9453625:9456949:-1 gene:F38E11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9453630-9456955(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38E11.4
Entrez Gene 185474 Entrez gene
SwissProt Q20167 EMBL-EBI
WormBase CE03296 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92773 Hypothetical protein F38E11.4 [Caenorhabditis elegans] ref|NP_501670.1| F38E11.4 [Caenorhabditis elegans] 0.0
blast CAE74014 Hypothetical protein CBG21662 [Caenorhabditis briggsae] 0.0
blast AAB52479 Hypothetical protein C34G6.6a [Caenorhabditis elegans] ref|NP_740858.1| C34G6.6a [Caenorhabditis elegans] 9.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.6E-38
Pfam IPR003014 EMBL-EBI N/apple PAN 2.5E-23
Pfam IPR003014 EMBL-EBI N/apple PAN 9.8E-28
Pfam IPR003014 EMBL-EBI N/apple PAN 1.6E-19
Pfam IPR003014 EMBL-EBI N/apple PAN 1.7E-14
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.6E-38
Pfam IPR003014 EMBL-EBI N/apple PAN 2.5E-23
Pfam IPR003014 EMBL-EBI N/apple PAN 9.8E-28
Pfam IPR003014 EMBL-EBI N/apple PAN 1.6E-19
Pfam IPR003014 EMBL-EBI N/apple PAN 6.4E-13
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 7.5E-38
Pfam IPR003014 EMBL-EBI N/apple PAN 2.5E-23
Pfam IPR003014 EMBL-EBI N/apple PAN 9.8E-28
Pfam IPR003014 EMBL-EBI N/apple PAN 1.6E-19
Pfam IPR003014 EMBL-EBI N/apple PAN 1.7E-14
Sequence
Target Sequence 
>C. ELEGANS:181591_AT
ctagctgtcgtcaatctttctcgaatacttcatttgctgaactccatattccatttccaa
cagaagatgattcgaaatgtggtggcattgaatcagaaccacataaatgggattacaatg
ttgtcgtggaaagaaacgatatgaaaactccttctctggttacaacaaaagacaaaacat
tccaagtttcttgcgatttttcaaaaattgctgataagaatcaacttgctgctttgaaac
caaaagttgaaggagacgttaaaagtgagaaagttctgatggaaatagtgagaaatggac
aagcagtaactacagttccgcttggtgcagaagtttctttaagatggacagtaatcgatg
aaaccgacaaacttggattcttcattaatgaatgcattgctgaacgtgttggtggacagc
caccatatccagaaccattgaagattatttatcaaggatgccctgaagagaaggttcgca
atcgacttcttcatgatccagtcgtgaagaatggagaagtatactccacaaaaatgaaag
tgtttcgattcgatggatcccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAGCTGTCGTCAATCTTTCTCGAA 569 225 1640 Antisense
GAATACTTCATTTGCTGAACTCCAT 240 327 1662 Antisense
AACTCCATATTCCATTTCCAACAGA 610 141 1679 Antisense
ACTCCTTCTCTGGTTACAACAAAAG 342 99 1786 Antisense
AACATTCCAAGTTTCTTGCGATTTT 116 139 1815 Antisense
TAACTACAGTTCCGCTTGGTGCAGA 435 639 1946 Antisense
GAAACCGACAAACTTGGATTCTTCA 664 357 1999 Antisense
GAATGCATTGCTGAACGTGTTGGTG 360 331 2029 Antisense
AGCCACCATATCCAGAACCATTGAA 26 85 2057 Antisense
GTTCGCAATCGACTTCTTCATGATC 189 443 2113 Antisense
GTGTTTCGATTCGATGGATCCCGAA 611 485 2179 Antisense
Sequence Source Affymetrix Proprietary Database