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[181590_at]

Description K02A6.1 /REP_DB=WormBase Gene ID /WP=CE02793 /TR=Q21110 /GB=AAC47060.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 56.4
(-2.7)
A 		51.7
(-3)
A 		66.3
(-1.9)
P 		134.2
(3)
A 		83
B 54.1
(-0.3)
P 		72.4
(3)
A 		46.5
(-1.6)
P 		38.7
(-3)
P 		34
C 56.9
(-1.9)
P 		68.7
(-1.3)
M 		35.1
(-3)
A 		155
(3)
A 		120
avr 55.8
(-2.4) 		64.3
(-1.5) 		49.3
(-3) 		109.3
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 30.1
(-2.2)
A 		27.6
(-3)
A 		44.2
(2.2)
P 		35
(-0.7)
A 		36
(-0.4)
A 		46.8
(3)
A 		19
B 29.9
(-2.8)
A 		28.8
(-3)
A 		47
(0.9)
A 		56.5
(3)
M 		46
(0.7)
P 		32.4
(-2.2)
A 		28
C 29.4
(-3)
A 		56.7
(3)
P 		36
(-1.5)
A 		41.4
(-0.4)
A 		51.9
(1.9)
A 		33.6
(-2.1)
A 		27
avr 29.8
(-3) 		37.7
(0.2) 		42.4
(2.1) 		44.3
(2.9) 		44.6
(3) 		37.6
(0.2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 20.5
(3)
A 		11.2
(-3)
A 		17.3
(0.9)
P 		19.6
(2.4)
A 		9
B 17.3
(2.6)
P 		17.9
(3)
A 		10.8
(-1.4)
P 		8.2
(-3)
P 		10
C 18.8
(-0.2)
P 		19.8
(0.3)
M 		12.2
(-3)
A 		26.1
(3)
A 		14
avr 18.9
(3) 		16.3
(0.2) 		13.4
(-3) 		18
(2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.5
(-3)
A 		9.8
(1.4)
A 		9.6
(1.2)
P 		8.9
(0.5)
A 		10.9
(2.5)
A 		11.4
(3)
A 		6
B 10.4
(-2.5)
A 		9.6
(-3)
A 		11.4
(-1.8)
A 		15
(0.6)
M 		18.7
(3)
P 		12.1
(-1.4)
A 		9
C 10.9
(-1.3)
A 		17.3
(3)
P 		9.2
(-2.4)
A 		8.3
(-3)
A 		16.8
(2.7)
A 		11.2
(-1.1)
A 		9
avr 8.9
(-3) 		12.2
(-0) 		10.1
(-1.9) 		10.7
(-1.4) 		15.5
(3) 		11.6
(-0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181590_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16780
Sequence Type Exemplar sequence
Representative Public ID K02A6.1 NCBI
Target Description K02A6.1 /REP_DB=WormBase Gene ID /WP=CE02793 /TR=Q21110 /GB=AAC47060.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076985(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076985 NCBI Caenorhabditis elegans K02A6.1 (K02A6.1) mRNA, complete cds. 11/11 None
K02A6.1 ENSEMBL cdna:known chromosome:CEL140:X:8219666:8220002:1 gene:K02A6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8219664-8220001(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02A6.1
Entrez Gene 186861 Entrez gene
SwissProt Q21110 EMBL-EBI
WormBase CE02793 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47060 Hypothetical protein K02A6.1 [Caenorhabditis elegans] ref|NP_509386.1| K02A6.1 [Caenorhabditis elegans] 1.0E-49
blast CAE74859 Hypothetical protein CBG22712 [Caenorhabditis briggsae] 4.0E-21
blast CAE74858 Hypothetical protein CBG22711 [Caenorhabditis briggsae] 8.0E-16
Sequence
Target Sequence 
>C. ELEGANS:181590_AT
ggacacttatcatttttgcttgcgttttcatgctcacatcagcttcactgttggaacatc
cttgtcgcgtgcaccgaataaaaagaccagacttccatttcaagaggaattgcttctttt
ctcccgcacagtgcattttggaaaatttcccgaaaagttccaatctgataccaatgcttt
caatatttgaggataagtcactgaccacaatttattcgaaaatgacccgctctaacaaca
tgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACACTTATCATTTTTGCTTGCGT 299 525 20 Antisense
TTTTGCTTGCGTTTTCATGCTCACA 587 677 33 Antisense
TGCTCACATCAGCTTCACTGTTGGA 344 581 50 Antisense
ACTGTTGGAACATCCTTGTCGCGTG 418 97 66 Antisense
ATCCTTGTCGCGTGCACCGAATAAA 273 37 77 Antisense
AAAGACCAGACTTCCATTTCAAGAG 442 123 101 Antisense
CAAGAGGAATTGCTTCTTTTCTCCC 562 183 120 Antisense
TTTTCTCCCGCACAGTGCATTTTGG 69 675 136 Antisense
GTTCCAATCTGATACCAATGCTTTC 281 441 176 Antisense
GTCACTGACCACAATTTATTCGAAA 654 465 216 Antisense
AAAATGACCCGCTCTAACAACATGC 336 131 238 Antisense
Sequence Source Affymetrix Proprietary Database