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[181589_at]

Description C36C9.5 /REP_DB=WormBase Gene ID /WP=CE19724 /TR=Q9TZK6 /GB=AAC67427.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 152.8
(3)
A 		64.7
(-0.8)
A 		86.3
(0.1)
A 		14.2
(-3)
A 		139
B 150.4
(3)
A 		82.9
(-0.1)
A 		84.1
(-0)
A 		18.4
(-3)
A 		132
C 154.5
(3)
A 		113.1
(-1.1)
A 		93.4
(-3)
A 		95.5
(-2.8)
A 		61
avr 152.6
(3) 		86.9
(-0.6) 		87.9
(-0.5) 		42.7
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 104.6
(2.1)
A 		118
(3)
A 		88.7
(0.9)
A 		44
(-2.2)
A 		91.2
(1.1)
A 		32.4
(-3)
A 		86
B 132.1
(3)
A 		86.4
(0.1)
A 		103.5
(1.2)
A 		82.7
(-0.2)
A 		69.4
(-1)
A 		38.6
(-3)
A 		94
C 194.8
(3)
P 		124.8
(0.2)
A 		105.7
(-0.6)
A 		45.8
(-3)
A 		76.5
(-1.8)
A 		46
(-3)
A 		149
avr 143.8
(3) 		109.7
(1) 		99.3
(0.5) 		57.5
(-1.9) 		79
(-0.7) 		39
(-3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 55.6
(3)
A 		14
(-1.7)
A 		22.6
(-0.7)
A 		2.1
(-3)
A 		54
B 48
(3)
A 		20.5
(-0.7)
A 		19.5
(-0.9)
A 		3.9
(-3)
A 		44
C 51.1
(3)
A 		32.5
(-0.2)
A 		32.5
(-0.2)
A 		16.1
(-3)
A 		35
avr 51.6
(3) 		22.3
(-1) 		24.9
(-0.6) 		7.4
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 19.3
(-1)
A 		42
(3)
A 		19.3
(-1)
A 		11.2
(-2.4)
A 		27.5
(0.4)
A 		7.9
(-3)
A 		34
B 46
(3)
A 		28.8
(-0.3)
A 		25.1
(-1)
A 		21.9
(-1.6)
A 		28.2
(-0.4)
A 		14.4
(-3)
A 		32
C 72.2
(3)
P 		38.1
(-0.2)
A 		26.9
(-1.3)
A 		9.2
(-3)
A 		24.8
(-1.5)
A 		15.4
(-2.4)
A 		63
avr 45.8
(3) 		36.3
(1.3) 		23.8
(-1) 		14.1
(-2.7) 		26.8
(-0.4) 		12.6
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18415
Sequence Type Exemplar sequence
Representative Public ID C36C9.5 NCBI
Target Description C36C9.5 /REP_DB=WormBase Gene ID /WP=CE19724 /TR=Q9TZK6 /GB=AAC67427.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075911 NCBI Caenorhabditis elegans C36C9.5 (C36C9.5) mRNA, complete cds. 11/11 None
C36C9.5 ENSEMBL cdna:known chromosome:CEL140:X:1699783:1703933:-1 gene:C36C9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1699782-1703933(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36C9.5
Entrez Gene 183275 Entrez gene
SwissProt Q9TZK6 EMBL-EBI
WormBase CE19724 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508312 C36C9.5 [Caenorhabditis elegans] gb|AAC67427.1| Hypothetical protein C36C9.5 [Caenorhabditis elegans] 0.0
blast F88109 protein T24E12.9 [imported] - Caenorhabditis elegans 1.0E-20
blast CAE63393 Hypothetical protein CBG07821 [Caenorhabditis briggsae] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:181589_AT
acaacaactcgtcaggtgctcataggacctatttcaatgtaacctccggccttccacgtc
ctgggcacaatggatctacttacagcatgcttcacaacagcatgccaggtgctcagaggg
cctatttcaatttaaactccggccttccatgtcctgagcacaatgcccatacatacaaca
tgcttcacagcagcattccaggttcttaccgatctcatcttaacctgatctccagccttc
cacagcataatgaccgaacataccgcatgcttcacaacagcatgtcaggtgctcgcggga
cccattttcatttgaagatttctagccttccacttcctaagcccaatatggagcccccta
cacttcacatcatgcttgaaagcaacacgtcaaatatgctaggagaaactgtgcatatta
tgattgatttaccagaacccacaaaaatcaacggaagttctcaactgctgaacaacgcac
ctgaaagtcgaccaatctgcccagatgaaaaggttgcccaagcattgccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACAACTCGTCAGGTGCTCATAG 211 113 842 Antisense
GACCTATTTCAATGTAACCTCCGGC 610 375 867 Antisense
CTTCCACGTCCTGGGCACAATGGAT 251 219 892 Antisense
TGGATCTACTTACAGCATGCTTCAC 78 551 912 Antisense
TCCATGTCCTGAGCACAATGCCCAT 320 591 987 Antisense
CACAGCAGCATTCCAGGTTCTTACC 350 195 1027 Antisense
TTCTTACCGATCTCATCTTAACCTG 443 689 1044 Antisense
TAATGACCGAACATACCGCATGCTT 36 635 1089 Antisense
CTTCCACTTCCTAAGCCCAATATGG 169 219 1168 Antisense
AACGCACCTGAAAGTCGACCAATCT 160 145 1315 Antisense
GAAAAGGTTGCCCAAGCATTGCCCA 2 353 1348 Antisense
Sequence Source Affymetrix Proprietary Database