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[181588_at]

Description W02D7.5 /REP_DB=WormBase Gene ID /WP=CE14444 /TR=O17526 /GB=AAB63935.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 85      6grp_total > 75      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 100.1
(-3)
A 		163.7
(0)
A 		131
(-1.5)
A 		225.3
(3)
A 		125
B 107.1
(-2.7)
A 		176.5
(3)
A 		126.8
(-1.1)
A 		103.2
(-3)
A 		73
C 141.9
(-3)
A 		157.1
(-1.6)
A 		155.7
(-1.7)
A 		205.5
(3)
A 		64
avr 116.4
(-3) 		165.8
(1.8) 		137.8
(-0.9) 		178
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 203.4
(-3)
A 		247.8
(-1.9)
P 		369.7
(0.9)
P 		322.7
(-0.2)
P 		342.1
(0.3)
P 		456.1
(3)
P 		253
B 150.1
(-3)
P 		227.9
(-1.8)
P 		385
(0.7)
P 		344.7
(0.1)
P 		277.2
(-1)
P 		527.5
(3)
P 		377
C 141.2
(-3)
A 		250.5
(-1.4)
P 		327.8
(-0.3)
P 		456.1
(1.6)
P 		373.4
(0.4)
P 		549.2
(3)
P 		408
avr 164.9
(-3) 		242.1
(-1.7) 		360.8
(0.4) 		374.5
(0.6) 		330.9
(-0.1) 		510.9
(3) 		346
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 36.4
(3)
A 		35.5
(1.4)
A 		34.3
(-0.7)
A 		33
(-3)
A 		3
B 34.2
(0.4)
A 		43.6
(3)
A 		29.4
(-0.9)
A 		22
(-3)
A 		22
C 47
(0.8)
A 		45.2
(0.2)
A 		54.3
(3)
A 		34.6
(-3)
A 		20
avr 39.2
(1.9) 		41.4
(3) 		39.3
(1.9) 		29.9
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 37.5
(-3)
A 		88.1
(1.1)
P 		80.5
(0.5)
P 		81.8
(0.6)
P 		103.2
(2.4)
P 		111
(3)
P 		74
B 52.2
(-3)
P 		75.9
(-2)
P 		93.5
(-1.3)
P 		91.3
(-1.4)
P 		112.6
(-0.5)
P 		196.7
(3)
P 		145
C 52.3
(-3)
A 		76.4
(-1.9)
P 		83.4
(-1.6)
P 		91.7
(-1.2)
P 		120.8
(0.1)
P 		183.8
(3)
P 		132
avr 47.3
(-3) 		80.1
(-1.3) 		85.8
(-1) 		88.3
(-0.9) 		112.2
(0.3) 		163.8
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181588_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12362
Sequence Type Exemplar sequence
Representative Public ID W02D7.5 NCBI
Target Description W02D7.5 /REP_DB=WormBase Gene ID /WP=CE14444 /TR=O17526 /GB=AAB63935.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072742 NCBI Caenorhabditis elegans W02D7.5 (W02D7.5) mRNA, complete cds. 11/11 None
SNAP00000029333 ENSEMBL cdna:SNAP chromosome:CEL140:V:8300412:8301823:-1 9/11 None
GENEFINDER00000029348 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8300412:8301823:-1 11/11 None
W02D7.5 ENSEMBL cdna:known chromosome:CEL140:V:8300412:8301823:-1 gene:W02D7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8300412-8301824(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D7.5
Entrez Gene 189117 Entrez gene
SwissProt O17526 EMBL-EBI
WormBase CE35793 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505143 W02D7.5 [Caenorhabditis elegans] gb|AAB63935.2| Hypothetical protein W02D7.5 [Caenorhabditis elegans] 1.0E-130
blast NP_505142 W02D7.4 [Caenorhabditis elegans] gb|AAB63934.1| Hypothetical protein W02D7.4 [Caenorhabditis elegans] 1.0E-109
blast NP_505143 W02D7.5 [Caenorhabditis elegans] gb|AAB63935.2| Hypothetical protein W02D7.5 [Caenorhabditis elegans] 1.0E-104
blast CAE66081 Hypothetical protein CBG11298 [Caenorhabditis briggsae] 2.0E-98
Sequence
Target Sequence 
>C. ELEGANS:181588_AT
aaaaccacagcttctgttccgagttgctcagccgaaggacaaggagaacatcctgaagtt
cttggatgctcatttcgcgaaagaggaaccatgtgctagagcgctcaaactttcccctga
aacatctcgtggaatctttacaactactgtaactcgttgcctcaatttcccattttctac
cgtagttcttcaagaaaatgacgagattgcagcgtgccttttagcttctgtatggaatcg
aacagacccaattgatatccaattcatcaactccgcccactcaaacttttggaaaattgc
tccgccaaacgttaattccattattcatagagaaatcggaagtgtcgccccacagttcac
aagaaaaggaattgcaacaaggatggtaactacaaatatgactaaaactaatttgaaaaa
atataatattggtggagttctctcggaaacatcgtctctcgcaaatcagatagttctcca
aaaagctggattcaagtgtctcaaagagctaccctactctgcaatagttgattcaaaagg
caatcgtgtacttcgaccggatgatggaacaacttctctttgtctcaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACCACAGCTTCTGTTCCGAGTT 459 131 36 Antisense
TGTTCCGAGTTGCTCAGCCGAAGGA 687 559 50 Antisense
GAGGAACCATGTGCTAGAGCGCTCA 228 405 118 Antisense
CAAACTTTCCCCTGAAACATCTCGT 235 191 141 Antisense
TACTGTAACTCGTTGCCTCAATTTC 677 643 180 Antisense
CAGCGTGCCTTTTAGCTTCTGTATG 323 203 245 Antisense
TTGCTCCGCCAAACGTTAATTCCAT 66 703 332 Antisense
AGAGAAATCGGAAGTGTCGCCCCAC 531 69 364 Antisense
AAACATCGTCTCTCGCAAATCAGAT 55 129 482 Antisense
GTCTCAAAGAGCTACCCTACTCTGC 65 471 533 Antisense
GAACAACTTCTCTTTGTCTCAATTT 262 353 602 Antisense
Sequence Source Affymetrix Proprietary Database