[Home] | [Total List]

[181587_at]

Description R01H10.4 /REP_DB=WormBase Gene ID /WP=CE00591 /TR=Q21622 /GB=CAA83462.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 95      6grp_total > 95      4grp_total > 11      6grp_highest_sub > In      6grp_high1_sub > 04      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1042
1 2 3 4 range
A 765.5
(-2.2)
P 		740.7
(-2.4)
P 		655.4
(-3)
P 		1485.1
(3)
P 		830
B 700.4
(-2.4)
P 		752.9
(-2.1)
P 		600.1
(-3)
P 		1642.1
(3)
P 		1042
C 751.6
(-2.1)
P 		699.8
(-2.4)
P 		603.8
(-3)
P 		1625.2
(3)
P 		1021
avr 739.2
(-2.3) 		731.1
(-2.3) 		619.8
(-3) 		1584.1
(3) 		964

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 827
1 2 3 4 5 6 range
A 538.5
(-1.9)
P 		660.3
(-0.9)
P 		403.9
(-3)
P 		1090.7
(2.6)
P 		729.6
(-0.3)
P 		1135.3
(3)
P 		731
B 554.2
(-0.5)
P 		308.3
(-3)
P 		557.1
(-0.5)
P 		903.4
(3)
P 		892.4
(2.8)
P 		908.4
(3)
P 		600
C 661.2
(-0.5)
P 		561.6
(-2)
P 		495.6
(-3)
P 		889.7
(3)
P 		827.1
(2)
P 		848
(2.4)
P 		394
avr 584.6
(-1.8) 		510.1
(-2.7) 		485.5
(-3) 		961.3
(3) 		816.4
(1.2) 		963.9
(3) 		478
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 278.7
(3)
P 		160.8
(-3)
P 		171.3
(-2.5)
P 		217.4
(-0.1)
P 		118
B 223.4
(-0.6)
P 		185.9
(-1.7)
P 		139.1
(-3)
P 		349.9
(3)
P 		211
C 248.8
(0.9)
P 		201.2
(-3)
P 		210.5
(-2.2)
P 		274
(3)
P 		73
avr 250.3
(1.3) 		182.6
(-2.5) 		173.6
(-3) 		280.4
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 99.3
(-2.6)
P 		234.8
(1.7)
P 		88
(-3)
P 		276.6
(3)
P 		220.2
(1.2)
P 		276.4
(3)
P 		189
B 192.8
(-0.9)
P 		102.6
(-3)
P 		135.3
(-2.2)
P 		239.3
(0.2)
P 		362.6
(3)
P 		338.7
(2.4)
P 		260
C 245.1
(1.5)
P 		171.4
(-1.3)
P 		126.1
(-3)
P 		178.9
(-1)
P 		267.6
(2.4)
P 		283.9
(3)
P 		158
avr 179.1
(-0.9) 		169.6
(-1.3) 		116.5
(-3) 		231.6
(0.8) 		283.5
(2.5) 		299.7
(3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181587_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7454
Sequence Type Exemplar sequence
Representative Public ID R01H10.4 NCBI
Target Description R01H10.4 /REP_DB=WormBase Gene ID /WP=CE00591 /TR=Q21622 /GB=CAA83462.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066869 NCBI Caenorhabditis elegans R01H10.4 (R01H10.4) mRNA, complete cds. 11/11 None
SNAP00000005991 ENSEMBL cdna:SNAP chromosome:CEL140:III:10254812:10257035:1 11/11 None
R01H10.4 ENSEMBL cdna:known chromosome:CEL140:III:10254812:10257035:1 gene:R01H10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006003 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10254807-10257031(+) 99.86 100.0
Public Domain and Genome References
Gene Title
Ensembl R01H10.4
Entrez Gene 187514 Entrez gene
SwissProt Q21622 EMBL-EBI
WormBase CE00591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83462 Hypothetical protein R01H10.4 [Caenorhabditis elegans] ref|NP_499270.1| R01H10.4 [Caenorhabditis elegans] 1.0E-142
blast CAE56177 Hypothetical protein CBG23797 [Caenorhabditis briggsae] 1.0E-131
blast CAE69224 Hypothetical protein CBG15264 [Caenorhabditis briggsae] 3.0E-10
Sequence
Target Sequence 
>C. ELEGANS:181587_AT
aatatggaccttgtttcagcactgcagaccgatcattctggcgtacgcttccccagcaat
gctaccaaaaccgttacatgtccctcatcacaggaatcggtaacccaatcgttcagaaag
tgatggactacgcggagctcttcaacaaatcggcgacggcatgcggaatgtgcaatgttc
aagtcgcgtgttcacccagatgtgattatgtagctggaggcaattcaatcggtgttgtcg
accggatttgtgatcttccaaccgagaaacaggcgtgcgcaatgactccacaggcatttg
acgaggacactggactttgtagagtatggccaccgagacatactacagccgtggatttcc
ttggtgcaattgtcccaccaacaattcgagatcaagtatggtccttaaaaccgctaagct
gcatcagtataagcggaaaatgttattgttgctgtgctccgtatactccaaatccatgtg
atgctcaatgcacacttcatccatgttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATGGACCTTGTTTCAGCACTGC 653 171 149 Antisense
GCAGACCGATCATTCTGGCGTACGC 508 311 172 Antisense
GCTACCAAAACCGTTACATGTCCCT 15 303 209 Antisense
ACATGTCCCTCATCACAGGAATCGG 429 105 224 Antisense
AAATCGGCGACGGCATGCGGAATGT 367 117 295 Antisense
TGCAATGTTCAAGTCGCGTGTTCAC 263 577 319 Antisense
ACCGGATTTGTGATCTTCCAACCGA 151 87 389 Antisense
AAACAGGCGTGCGCAATGACTCCAC 364 129 415 Antisense
GCCACCGAGACATACTACAGCCGTG 634 279 477 Antisense
TACAGCCGTGGATTTCCTTGGTGCA 3 645 492 Antisense
TCAATGCACACTTCATCCATGTTCC 37 633 633 Antisense
Sequence Source Affymetrix Proprietary Database