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[181586_at]

Description F42C5.3 /REP_DB=WormBase Gene ID /WP=CE04556 /TR=Q20322 /GB=AAA81479.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 88      4grp_total > 01      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 6.5
(-2.9)
A 		4.3
(-3)
A 		16.5
(-2.2)
A 		93.7
(3)
P 		89
B 13.2
(-1.7)
A 		1.3
(-3)
A 		8.3
(-2.2)
A 		56.2
(3)
P 		55
C 1.5
(-3)
A 		19.1
(-1.5)
A 		15
(-1.9)
P 		73.2
(3)
P 		72
avr 7.1
(-3) 		8.2
(-2.9) 		13.3
(-2.4) 		74.4
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 48.2
(-2.2)
P 		35.8
(-3)
P 		88.2
(0.4)
P 		53.8
(-1.8)
P 		104.8
(1.5)
P 		127.8
(3)
P 		92
B 55.5
(-2.4)
P 		37.4
(-3)
P 		64.9
(-2.1)
P 		41.6
(-2.9)
P 		144.2
(0.5)
P 		218.3
(3)
P 		181
C 30.4
(-3)
P 		30.9
(-3)
P 		34.1
(-2.9)
A 		40.4
(-2.8)
P 		94.8
(-1.5)
P 		296.3
(3)
P 		266
avr 44.7
(-2.7) 		34.7
(-3) 		62.4
(-2.1) 		45.3
(-2.6) 		114.6
(-0.3) 		214.1
(3) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.4
(-2.3)
A 		0.9
(-3)
A 		4.3
(-1.4)
A 		13.7
(3)
P 		13
B 4.2
(-1)
A 		0.3
(-3)
A 		1.9
(-2.2)
A 		12
(3)
P 		12
C 0.5
(-3)
A 		5.5
(-0.5)
A 		5.2
(-0.6)
P 		12.3
(3)
P 		12
avr 2.4
(-2.9) 		2.2
(-3) 		3.8
(-2.1) 		12.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 8.9
(-3)
P 		12.7
(-2)
P 		19.2
(-0.3)
P 		13.7
(-1.7)
P 		31.6
(3)
P 		31.1
(2.9)
P 		23
B 19.3
(-2.3)
P 		12.5
(-2.9)
P 		15.8
(-2.6)
P 		11
(-3)
P 		58.6
(1.1)
P 		81.4
(3)
P 		70
C 11.3
(-2.8)
P 		9.4
(-2.9)
P 		8.7
(-3)
A 		8.1
(-3)
P 		30.7
(-1.5)
P 		99.2
(3)
P 		91
avr 13.2
(-2.8) 		11.5
(-2.9) 		14.6
(-2.6) 		10.9
(-3) 		40.3
(-0) 		70.6
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8575
Sequence Type Exemplar sequence
Representative Public ID F42C5.3 NCBI
Target Description F42C5.3 /REP_DB=WormBase Gene ID /WP=CE04556 /TR=Q20322 /GB=AAA81479.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068760(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068760 NCBI Caenorhabditis elegans F42C5.3 (F42C5.3) mRNA, complete cds. 11/11 None
SNAP00000034676 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7286166:7287495:-1 11/11 None
GENEFINDER00000034689 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7286166:7287510:-1 11/11 None
F42C5.3 ENSEMBL cdna:known chromosome:CEL140:IV:7286166:7287351:-1 gene:F42C5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7286171-7287357(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42C5.3
Entrez Gene 185663 Entrez gene
SwissProt Q20322 EMBL-EBI
WormBase CE04556 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81479 Hypothetical protein F42C5.3 [Caenorhabditis elegans] ref|NP_501161.1| F42C5.3 [Caenorhabditis elegans] 1.0E-121
blast CAE61851 Hypothetical protein CBG05827 [Caenorhabditis briggsae] 4.0E-13
blast CAE61851 Hypothetical protein CBG05827 [Caenorhabditis briggsae] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:181586_AT
ggaacaaaaacctcgatcaacaaattgcgttgggaaacgagttgaacaacaagtacaccg
agatttcaaatcaaaactcaagacttcaaattaaaattggacaagaagaagacatcagag
tgttcaaaataaaacttctcgatgtatcaaaggtttggactgacgtaaaagtgaattatc
aagattatctgagaaacactctagacgaacattcaaattcgaataaaagtgatgttttga
aggaaatcgacactttgatttacaataaagaaaaattgaacgaagttttgattacagcaa
aaaaacttcttggaaagtgccaaaagtttacaacatctgacagtttcaaagtcatcaacg
attcattgacagagctgatgaggttcaagtttgaagatgatattttgattgaactaaaaa
caattattaagaaaaatggttcagcggaacaatcatttttgactaaaatggatgaaacaa
ttgacaaatacaacgaaatggtcaatgaacttcctggtttacagcttaaatccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAAAAACCTCGATCAACAAAT 562 511 200 Antisense
AACAACAAGTACACCGAGATTTCAA 552 135 244 Antisense
AAAACTTCTCGATGTATCAAAGGTT 141 131 330 Antisense
GAAACACTCTAGACGAACATTCAAA 634 355 392 Antisense
AAGTTTACAACATCTGACAGTTTCA 17 157 523 Antisense
GACAGTTTCAAAGTCATCAACGATT 583 367 538 Antisense
AACGATTCATTGACAGAGCTGATGA 405 137 556 Antisense
GAGCTGATGAGGTTCAAGTTTGAAG 230 387 571 Antisense
GGTTCAGCGGAACAATCATTTTTGA 380 505 637 Antisense
GAAATGGTCAATGAACTTCCTGGTT 302 361 694 Antisense
CTTCCTGGTTTACAGCTTAAATCCG 357 217 709 Antisense
Sequence Source Affymetrix Proprietary Database