[Home] | [Total List]

[181585_at]

Description C29F5.3 /REP_DB=WormBase Gene ID /WP=CE02510 /TR=Q18305 /GB=AAC46822.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 345
1 2 3 4 range
A 137.2
(-0.2)
P 		47.7
(-3)
A 		64.3
(-2.5)
A 		239.5
(3)
A 		192
B 123.8
(-0.4)
A 		63.3
(-2.7)
A 		55.3
(-3)
A 		211.6
(3)
P 		156
C 134.5
(-1.2)
P 		90
(-2)
A 		32
(-3)
A 		376.5
(3)
P 		345
avr 131.8
(-0.8) 		67
(-2.6) 		50.5
(-3) 		275.9
(3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 197.8
(3)
A 		131.1
(-0.7)
P 		102.5
(-2.3)
A 		90
(-3)
A 		121.4
(-1.3)
A 		135.8
(-0.5)
M 		108
B 135
(0.8)
P 		167
(3)
P 		81.1
(-3)
A 		86.7
(-2.6)
A 		113.5
(-0.7)
P 		129.8
(0.4)
P 		86
C 103.5
(0.4)
P 		152.1
(3)
A 		41.7
(-3)
A 		79.6
(-0.9)
A 		92.8
(-0.2)
M 		123
(1.4)
P 		110
avr 145.4
(2.6) 		150.1
(3) 		75.1
(-3) 		85.4
(-2.2) 		109.2
(-0.3) 		129.5
(1.4) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 49.9
(3)
P 		10.3
(-3)
A 		16.8
(-2)
A 		35.1
(0.8)
A 		40
B 39.5
(2)
A 		15.6
(-2.5)
A 		12.8
(-3)
A 		45.1
(3)
P 		32
C 44.5
(0.8)
P 		25.9
(-1.3)
A 		11.2
(-3)
A 		63.5
(3)
P 		52
avr 44.6
(2.4) 		17.3
(-2.4) 		13.6
(-3) 		47.9
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 36.5
(0.5)
A 		46.6
(3)
P 		22.3
(-3)
A 		22.8
(-2.9)
A 		36.6
(0.5)
A 		33.1
(-0.3)
M 		24
B 47
(1.6)
P 		55.6
(3)
P 		19.7
(-3)
A 		23
(-2.4)
A 		46.1
(1.4)
P 		48.4
(1.8)
P 		36
C 38.4
(1.7)
P 		46.4
(3)
A 		10.6
(-3)
A 		16
(-2.1)
A 		30
(0.3)
M 		41.2
(2.1)
P 		36
avr 40.6
(1.3) 		49.5
(3) 		17.5
(-3) 		20.6
(-2.4) 		37.6
(0.8) 		40.9
(1.4) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5770
Sequence Type Exemplar sequence
Representative Public ID C29F5.3 NCBI
Target Description C29F5.3 /REP_DB=WormBase Gene ID /WP=CE02510 /TR=Q18305 /GB=AAC46822.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062861(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062861 NCBI Caenorhabditis elegans C29F5.3 (C29F5.3) mRNA, complete cds. 11/11 None
SNAP00000032518 ENSEMBL cdna:SNAP chromosome:CEL140:II:6290600:6292472:-1 11/11 None
GENEFINDER00000032530 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6290600:6294099:-1 11/11 None
C29F5.3 ENSEMBL cdna:known chromosome:CEL140:II:6290600:6291604:-1 gene:C29F5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6290596-6291601(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F5.3
Entrez Gene 183011 Entrez gene
SwissProt Q18305 EMBL-EBI
WormBase CE02510 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_495262 C29F5.3 [Caenorhabditis elegans] gb|AAC46822.1| Hypothetical protein C29F5.3 [Caenorhabditis elegans] 1.0E-145
blast NP_495262 C29F5.3 [Caenorhabditis elegans] gb|AAC46822.1| Hypothetical protein C29F5.3 [Caenorhabditis elegans] 1.0E-137
blast NP_495263 MiRP K channel accessory Subunit family member (mps-1) [Caenorhabditis elegans] gb|AAC46823.2| Mirp k channel accessory subunit protein 1 [Caenorhabditis elegans] 1.0E-131
blast AAO65851 MPS-1 [Caenorhabditis elegans] 1.0E-128
blast XP_590126 PREDICTED: similar to zinc finger CCCH type containing 12A isoform 1 [Bos taurus] 3.0E-11
blast XP_417156 PREDICTED: similar to KIAA1726 protein [Gallus gallus] 7.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032530 1 43-65
Sequence
Target Sequence 
>C. ELEGANS:181585_AT
aaattccgaccgctaacactcgatttcgtcgaatatcaatcagatcggttttatcgacat
gctcccgaactattcacatatgaaaacactagtcaacgaaccgaatctttgcgtcaacga
ctatttgcgttgcctcatgaaccggactataatcttgtgaaaaattcgaaacgacaagtg
actgatgagaggagagcttacttgtgtgctgaacttgaagctattctcatttcaatgagt
tatgcagccgggaaaatgtttcgagatgttgcagaattgccatgtattgataattgtttt
catggattaagagtggaagatgttgctccgaagaaatttgcggatgcattctacagaaaa
tatccgaaacgagaaggaagatgtgatttacttcaagaatgggttatggagcctgttgta
gaagtttctgagaaacaaacaaatagcaatgaactaagtgatgatgttcttgttccaact
ccattgcctctcccggaaaagtctagtcaatctgtcgtgaatgttaataaaggaaaaatc
gaacttccaagagatcattcccttgggtcgttgcttcaatggttcacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCCGACCGCTAACACTCGATT 685 113 199 Antisense
AGATCGGTTTTATCGACATGCTCCC 134 65 240 Antisense
ACATGCTCCCGAACTATTCACATAT 438 107 255 Antisense
GAACCGAATCTTTGCGTCAACGACT 94 345 296 Antisense
ACGACTATTTGCGTTGCCTCATGAA 312 93 315 Antisense
GCCTCATGAACCGGACTATAATCTT 363 281 330 Antisense
GGAGAGCTTACTTGTGTGCTGAACT 247 519 389 Antisense
GTGATGATGTTCTTGTTCCAACTCC 91 485 656 Antisense
CATTGCCTCTCCCGGAAAAGTCTAG 420 215 680 Antisense
CGAACTTCCAAGAGATCATTCCCTT 50 253 738 Antisense
GGGTCGTTGCTTCAATGGTTCACAC 110 497 763 Antisense
Sequence Source Affymetrix Proprietary Database