[Home] | [Total List]

[181584_at]

Description K07H8.8 /REP_DB=WormBase Gene ID /WP=CE18028 /TR=O45177 /GB=AAC04429.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 30.4
(-1.6)
A 		9.6
(-3)
A 		9.5
(-3)
A 		100.8
(3)
P 		91
B 28.9
(3)
P 		16.5
(-2.2)
A 		20.1
(-0.7)
A 		14.5
(-3)
A 		14
C 12.9
(-3)
A 		32.9
(2.4)
P 		30.1
(1.6)
A 		35.3
(3)
A 		22
avr 24.1
(-2.1) 		19.7
(-3) 		19.9
(-3) 		50.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13
(-1)
A 		4.7
(-2.9)
A 		18.4
(0.3)
A 		5.5
(-2.7)
A 		30
(3)
A 		4.4
(-3)
A 		26
B 24.2
(2.3)
A 		13.2
(-2)
A 		26.1
(3)
A 		16
(-0.9)
A 		11.7
(-2.6)
A 		10.6
(-3)
A 		16
C 25.9
(2.3)
M 		28.9
(3)
A 		3.7
(-3)
A 		13.1
(-0.8)
A 		14.9
(-0.3)
A 		18.4
(0.5)
A 		25
avr 21
(3) 		15.6
(-0.3) 		16.1
(0) 		11.5
(-2.8) 		18.9
(1.7) 		11.1
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.1
(1.3)
A 		2.1
(-3)
A 		2.5
(-2.8)
A 		14.8
(3)
P 		13
B 9.2
(3)
P 		4.1
(-2)
A 		4.7
(-1.4)
A 		3.1
(-3)
A 		6
C 4.3
(-3)
A 		9.5
(2)
P 		10.5
(3)
A 		6
(-1.4)
A 		6
avr 8.2
(3) 		5.2
(-3) 		5.9
(-1.6) 		8
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.4
(-2)
A 		1.7
(-2.6)
A 		4
(-0.8)
A 		1.4
(-2.8)
A 		9.1
(3)
A 		1.1
(-3)
A 		8
B 8.4
(3)
A 		4.4
(-2.5)
A 		6.3
(0.1)
A 		4.2
(-2.7)
A 		4.7
(-2)
A 		4
(-3)
A 		4
C 9.6
(3)
M 		8.8
(2.4)
A 		0.9
(-3)
A 		2.6
(-1.8)
A 		4.8
(-0.3)
A 		6.2
(0.7)
A 		9
avr 6.8
(3) 		5
(0.4) 		3.7
(-1.5) 		2.7
(-3) 		6.2
(2.1) 		3.8
(-1.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181584_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9138
Sequence Type Exemplar sequence
Representative Public ID K07H8.8 NCBI
Target Description K07H8.8 /REP_DB=WormBase Gene ID /WP=CE18028 /TR=O45177 /GB=AAC04429.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068986 NCBI Caenorhabditis elegans K07H8.8 (K07H8.8) mRNA, complete cds. 11/11 None
GENEFINDER00000006926 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8266733:8268416:-1 11/11 None
K07H8.8 ENSEMBL cdna:known chromosome:CEL140:IV:8266733:8268416:-1 gene:K07H8.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006913 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8266738-8268422(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07H8.8
Entrez Gene 187128 Entrez gene
SwissProt O45177 EMBL-EBI
WormBase CE18028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04429 Hypothetical protein K07H8.8 [Caenorhabditis elegans] ref|NP_501387.1| K07H8.8 [Caenorhabditis elegans] 0.0
blast CAE58443 Hypothetical protein CBG01579 [Caenorhabditis briggsae] 1.0E-132
blast CAE68456 Hypothetical protein CBG14246 [Caenorhabditis briggsae] 6.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181584_AT
ggtgcaacgcagtttgaattctaactttgataatataattttcacacgaaatccctatga
tcggttcatttcaggatttaccgagaagtgtgtaaataacacggacacaaatatttgtca
cggatgtggaaccgacatccgatgtttcttgcagaaagaatatcgacgtttaattagaat
gagtatgctatttcctgtttacactggagcagacacacattttgctcctcaaacttggta
ctgcgatatgaaaaacaacatcaagaactcaacagtaatacaatattcgagtacggggac
agaaaaaataaagatgattgataatttattgaccgttttcaaaaatagaaatgtaccaga
agaaaatctgaacgaagtcagagaagaactttcaaaaggaaaaacccagcactcaacatc
tggaacatctctacgacttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCAACGCAGTTTGAATTCTAAC 135 501 522 Antisense
CACACGAAATCCCTATGATCGGTTC 206 189 564 Antisense
TGATCGGTTCATTTCAGGATTTACC 611 565 579 Antisense
ATTTGTCACGGATGTGGAACCGACA 75 15 634 Antisense
GGAACCGACATCCGATGTTTCTTGC 44 531 649 Antisense
GAGTATGCTATTTCCTGTTTACACT 393 399 702 Antisense
TTTCCTGTTTACACTGGAGCAGACA 662 667 712 Antisense
GCAGACACACATTTTGCTCCTCAAA 358 313 730 Antisense
TGCTCCTCAAACTTGGTACTGCGAT 470 581 744 Antisense
AAGGAAAAACCCAGCACTCAACATC 439 161 917 Antisense
CATCTGGAACATCTCTACGACTTAA 441 211 938 Antisense
Sequence Source Affymetrix Proprietary Database