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[181582_at]

Description F18C12.3 /REP_DB=WormBase Gene ID /WP=CE15869 /TR=O17584 /GB=CAA99833.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 81      6grp_total > 46      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 363.5
(3)
P 		337.8
(1)
P 		284.7
(-3)
P 		320.3
(-0.3)
P 		79
B 431.4
(3)
P 		291.2
(-3)
P 		334.8
(-1.1)
P 		312.6
(-2.1)
P 		140
C 384.5
(1)
P 		297
(-3)
P 		296.7
(-3)
P 		427.7
(3)
P 		131
avr 393.1
(3) 		308.7
(-2.8) 		305.4
(-3) 		353.5
(0.3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 454.2
(3)
P 		304.4
(-1.3)
P 		276.8
(-2.1)
P 		269.8
(-2.3)
P 		244.5
(-3)
P 		309.9
(-1.1)
P 		210
B 247.1
(0.5)
P 		273.6
(1.6)
P 		307
(3)
P 		165.8
(-3)
P 		216.6
(-0.8)
P 		299.7
(2.7)
P 		141
C 203.8
(-2.1)
P 		339.6
(2.3)
P 		241
(-0.9)
P 		226.6
(-1.4)
P 		176.2
(-3)
P 		359.5
(3)
P 		183
avr 301.7
(1.8) 		305.9
(2.1) 		274.9
(0.4) 		220.7
(-2.5) 		212.4
(-3) 		323
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 132.4
(3)
P 		73.3
(-1.1)
P 		74.4
(-1.1)
P 		46.9
(-3)
P 		86
B 137.6
(3)
P 		71.9
(-2.6)
P 		77.6
(-2.1)
P 		66.6
(-3)
P 		71
C 127.3
(3)
P 		85.4
(-1.6)
P 		103.4
(0.4)
P 		72.1
(-3)
P 		55
avr 132.4
(3) 		76.9
(-1.7) 		85.1
(-1) 		61.9
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 83.7
(-0.1)
P 		108.3
(3)
P 		60.3
(-3)
P 		68.4
(-2)
P 		73.8
(-1.3)
P 		75.4
(-1.1)
P 		48
B 86
(0.7)
P 		91.1
(1.2)
P 		74.6
(-0.3)
P 		43.9
(-3)
P 		88
(0.9)
P 		111.8
(3)
P 		68
C 75.5
(-0.6)
P 		103.6
(1.7)
P 		61.3
(-1.7)
P 		45.6
(-3)
P 		57
(-2.1)
P 		120.4
(3)
P 		75
avr 81.7
(0.5) 		101
(2.8) 		65.4
(-1.5) 		52.6
(-3) 		72.9
(-0.6) 		102.5
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2253
Sequence Type Exemplar sequence
Representative Public ID F18C12.3 NCBI
Target Description F18C12.3 /REP_DB=WormBase Gene ID /WP=CE15869 /TR=O17584 /GB=CAA99833.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059823 NCBI Caenorhabditis elegans F18C12.3 (F18C12.3) mRNA, complete cds. 11/11 None
SNAP00000018781 ENSEMBL cdna:SNAP chromosome:CEL140:I:8105821:8106492:1 11/11 None
GENEFINDER00000018787 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8106044:8106492:1 9/11 None
F18C12.3.1 ENSEMBL cdna:known chromosome:CEL140:I:8103864:8106549:1 gene:F18C12.3 11/11 None
F18C12.3.2 ENSEMBL cdna:known chromosome:CEL140:I:8103866:8106508:1 gene:F18C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8103796-8106423(+) 96.58 100.0
Public Domain and Genome References
Gene Title
Ensembl F18C12.3
Entrez Gene 172595 Entrez gene
SwissProt O17584 EMBL-EBI
WormBase CE15869 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99833 Hypothetical protein F18C12.3 [Caenorhabditis elegans] emb|CAB03870.1| Hypothetical protein F18C12.3 [Caenorhabditis elegans] ref|NP_492224.1| F18C12.3 [Caenorhabditis elegans] 1.0E-180
blast CAE66543 Hypothetical protein CBG11851 [Caenorhabditis briggsae] 3.0E-72
blast CAA99833 Hypothetical protein F18C12.3 [Caenorhabditis elegans] emb|CAB03870.1| Hypothetical protein F18C12.3 [Caenorhabditis elegans] ref|NP_492224.1| F18C12.3 [Caenorhabditis elegans] 4.0E-57
blast CAA99833 Hypothetical protein F18C12.3 [Caenorhabditis elegans] emb|CAB03870.1| Hypothetical protein F18C12.3 [Caenorhabditis elegans] ref|NP_492224.1| F18C12.3 [Caenorhabditis elegans] 5.0E-48
blast CAE66543 Hypothetical protein CBG11851 [Caenorhabditis briggsae] 1.0E-12
blast CAE66543 Hypothetical protein CBG11851 [Caenorhabditis briggsae] 4.0E-10
Sequence
Target Sequence 
>C. ELEGANS:181582_AT
aagccaacaaagtcagctccaattgttaaaaaagttgaagaaaagaaagtggaggagaat
gaagtttccgatgatgaatcagatcagaaaactcttgtcatgaaagttgatttatcgaaa
ggtggaaaaattgcaaaagcacagaaattttccacaacagcaccaaaatcagcgaaaatt
gttgctccggtatcagaagatgagaatgacgatgatgaaagcagctctttctttttacca
aaatctggagtagtggctcccagaaaaattataccaaagaagccgtcggaaaatgttgaa
aaagttgacaaaagattccaaaaaggaacccaaaaaaagtcagaagctgtggttgagaag
aagaaaggttcaagcaaaagtgcagtatctggtgaaatgcatccatcctggattgctagt
caacttaaaaagaaagagctcgcctcggctaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCAACAAAGTCAGCTCCAATTG 683 147 1153 Antisense
ATCAGATCAGAAAACTCTTGTCATG 559 29 1230 Antisense
TTTCCACAACAGCACCAAAATCAGC 518 665 1301 Antisense
GAAAATTGTTGCTCCGGTATCAGAA 12 353 1326 Antisense
AGCAGCTCTTTCTTTTTACCAAAAT 402 75 1372 Antisense
CAAAATCTGGAGTAGTGGCTCCCAG 399 189 1391 Antisense
GTGGCTCCCAGAAAAATTATACCAA 491 491 1405 Antisense
TATACCAAAGAAGCCGTCGGAAAAT 653 651 1422 Antisense
GTATCTGGTGAAATGCATCCATCCT 372 455 1537 Antisense
ATCCATCCTGGATTGCTAGTCAACT 533 39 1553 Antisense
AAGAAAGAGCTCGCCTCGGCTAAAC 17 129 1582 Antisense
Sequence Source Affymetrix Proprietary Database