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[181581_at] 7TM chemoreceptor, srz family

Description W05E7.2 /REP_DB=WormBase Gene ID /WP=CE17289 /TR=Q9TYW8 /GB=AAC68997.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 10      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 23.7
(1)
A 		5.1
(-3)
A 		9.2
(-2.1)
A 		32.8
(3)
A 		28
B 3.4
(-3)
A 		33.2
(3)
A 		9.9
(-1.7)
A 		21.7
(0.7)
A 		30
C 3.3
(-3)
A 		3.9
(-2.9)
A 		3.8
(-2.9)
A 		53.5
(3)
A 		50
avr 10.1
(-2.5) 		14.1
(-1.6) 		7.6
(-3) 		36
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 7.7
(-2.1)
A 		4.1
(-2.7)
A 		17.9
(-0.4)
A 		38.2
(3)
A 		5.9
(-2.4)
A 		2.3
(-3)
A 		36
B 23.8
(1.9)
A 		4.1
(-2.3)
A 		2.3
(-2.7)
A 		29
(3)
A 		0.8
(-3)
A 		9.7
(-1.1)
A 		28
C 2.8
(-2.9)
A 		7.4
(-1.9)
A 		4.2
(-2.6)
A 		30.7
(3)
A 		5.5
(-2.3)
A 		2.1
(-3)
A 		29
avr 11.4
(-1.5) 		5.2
(-2.8) 		8.1
(-2.2) 		32.6
(3) 		4.1
(-3) 		4.7
(-2.9) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.6
(3)
A 		1.1
(-3)
A 		2.4
(-2)
A 		4.8
(-0)
A 		8
B 1.1
(-3)
A 		8.2
(3)
A 		2.3
(-2)
A 		4.6
(-0)
A 		7
C 1.1
(-3)
A 		1.1
(-3)
A 		1.3
(-2.8)
A 		9
(3)
A 		8
avr 3.6
(-0.7) 		3.5
(-0.8) 		2
(-3) 		6.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-2.5)
A 		1.5
(-2.4)
A 		3.9
(-0.8)
A 		9.7
(3)
A 		1.8
(-2.2)
A 		0.6
(-3)
A 		9
B 8.3
(3)
A 		1.4
(-2.2)
A 		0.5
(-2.9)
A 		7.7
(2.6)
A 		0.3
(-3)
A 		3.6
(-0.5)
A 		8
C 1
(-2.7)
A 		2.3
(-1.3)
A 		1.1
(-2.6)
A 		6.2
(3)
A 		1.8
(-1.8)
A 		0.7
(-3)
A 		6
avr 3.6
(-0.9) 		1.7
(-2.6) 		1.8
(-2.5) 		7.9
(3) 		1.3
(-3) 		1.6
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10857
Sequence Type Exemplar sequence
Representative Public ID W05E7.2 NCBI
Target Description W05E7.2 /REP_DB=WormBase Gene ID /WP=CE17289 /TR=Q9TYW8 /GB=AAC68997.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067944(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067944 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-32) (srz-32) mRNA, complete cds. 9/11 None
W05E7.2 ENSEMBL cdna:known chromosome:CEL140:IV:3436318:3437875:1 gene:W05E7.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3436246-3437407(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Gene Symbol srz-32
Ensembl W05E7.2
Entrez Gene 189213 Entrez gene
SwissProt Q9TYW8 EMBL-EBI
WormBase CE37277 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68997 Hypothetical protein W05E7.2 [Caenorhabditis elegans] ref|NP_500345.2| Serpentine Receptor, class Z family member (srz-32) [Caenorhabditis elegans] 1.0E-173
blast CAB11539 Hypothetical protein H12I19.1 [Caenorhabditis elegans] ref|NP_502707.2| Serpentine Receptor, class Z family member (srz-42) [Caenorhabditis elegans] 7.0E-44
blast CAB04367 Hypothetical protein F40D4.9a [Caenorhabditis elegans] ref|NP_001023905.1| Serpentine Receptor, class Z family member (srz-66) [Caenorhabditis elegans] 9.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 5.6E-52
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500345.2 7 24-46,73-90,105-127,158-180,195-217,240-262,272-294
W05E7.2 7 24-46,73-90,105-127,158-180,195-217,240-262,272-294
Sequence
Target Sequence 
>C. ELEGANS:181581_AT
tcaattcccgctgcagtacaaatatccccaagtcctttccattttttatggatctcgact
ttgtattagttatcacagttatttgtactctctgatgaaagcaggggtaggctaccttta
cgttttgttccttaaaaatcaatactacaaactatacagacttctcgtacaggcgttcat
cttcccgatcaccaaccacttctacaaaatggtcaaaacttcatacatcatattcacgtg
tggacttctattagttttattcggattctcactcgatattgactttaatgatgcatcaat
cttctctctaaaatccatatttctaatgttgttatttttgataacttgcatactatatgt
aatatccgaagtgtttaattatttgatatctatacttgcattggaaaagttcatcgtcta
tttttccccacgagctgagcattttgtgaagcgagttcaaaacgttcagatgaaattcat
caagtgcttctatcttgcgattggtgttaaggaattagttgtcaatacatcgatgctcct
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTCCCGCTGCAGTACAAATAT 561 633 114 Antisense
TGCAGTACAAATATCCCCAAGTCCT 115 577 125 Antisense
GGATCTCGACTTTGTATTAGTTATC 671 511 163 Antisense
TACAGACTTCTCGTACAGGCGTTCA 38 643 268 Antisense
AAACTTCATACATCATATTCACGTG 103 129 329 Antisense
TATTCACGTGTGGACTTCTATTAGT 387 663 344 Antisense
GTTTTATTCGGATTCTCACTCGATA 447 449 367 Antisense
GCATCAATCTTCTCTCTAAAATCCA 520 305 406 Antisense
TTTTCCCCACGAGCTGAGCATTTTG 604 677 535 Antisense
AGTGCTTCTATCTTGCGATTGGTGT 573 59 596 Antisense
GTTGTCAATACATCGATGCTCCTAA 706 437 631 Antisense
Sequence Source Affymetrix Proprietary Database