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[181580_at]

Description K07B1.7 /REP_DB=WormBase Gene ID /WP=CE11888 /TR=O01886 /GB=AAB54241.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      6grp_highest_nonorm > 90      6grp_total > 65      4grp_total > 14      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 63.3
(3)
P 		51.1
(0.5)
A 		33.6
(-3)
A 		52.3
(0.8)
P 		30
B 93.2
(3)
P 		87
(2.2)
M 		45.7
(-3)
A 		76.2
(0.9)
P 		48
C 93.3
(1)
P 		5.8
(-3)
A 		55.8
(-0.7)
A 		136.7
(3)
P 		131
avr 83.3
(2.3) 		48
(-2.6) 		45
(-3) 		88.4
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 43.5
(-3)
P 		80.3
(0.9)
P 		75.4
(0.4)
P 		72.6
(0.1)
P 		67.2
(-0.5)
P 		100
(3)
P 		57
B 68.2
(-2.3)
P 		63.1
(-3)
P 		94.4
(1.3)
P 		100.2
(2.1)
P 		69.3
(-2.1)
P 		106.5
(3)
P 		43
C 68.6
(-1.1)
P 		98.5
(0.7)
P 		60.1
(-1.7)
P 		135.7
(3)
P 		38.4
(-3)
P 		124.8
(2.3)
P 		97
avr 60.1
(-2.8) 		80.6
(-0.4) 		76.6
(-0.9) 		102.8
(2.1) 		58.3
(-3) 		110.4
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 23.1
(3)
P 		11.1
(-1.7)
A 		8.8
(-2.6)
A 		7.7
(-3)
P 		15
B 29.7
(3)
P 		21.5
(0.4)
M 		10.6
(-3)
A 		16.2
(-1.2)
P 		19
C 30.9
(3)
P 		1.7
(-3)
A 		19.4
(0.6)
A 		23.1
(1.4)
P 		29
avr 27.9
(3) 		11.4
(-3) 		12.9
(-2.5) 		15.7
(-1.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 8
(-3)
P 		28.5
(3)
P 		16.4
(-0.5)
P 		18.4
(0)
P 		20.3
(0.6)
P 		24.4
(1.8)
P 		21
B 23.7
(-2.1)
P 		21
(-3)
P 		22.9
(-2.4)
P 		26.5
(-1.2)
P 		28.1
(-0.7)
P 		39.7
(3)
P 		19
C 25.4
(-0.3)
P 		30
(0.6)
P 		15.3
(-2.4)
P 		27.3
(0)
P 		12.4
(-3)
P 		41.8
(3)
P 		29
avr 19
(-2.7) 		26.5
(-0.1) 		18.2
(-3) 		24.1
(-0.9) 		20.3
(-2.3) 		35.3
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11574
Sequence Type Exemplar sequence
Representative Public ID K07B1.7 NCBI
Target Description K07B1.7 /REP_DB=WormBase Gene ID /WP=CE11888 /TR=O01886 /GB=AAB54241.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073018(11), NM_073019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073018 NCBI Caenorhabditis elegans K07B1.7a (K07B1.7) mRNA, complete cds. 11/11 None
NM_073019 NCBI Caenorhabditis elegans K07B1.7b (K07B1.7) mRNA, complete cds. 11/11 None
SNAP00000012091 ENSEMBL cdna:SNAP chromosome:CEL140:V:9347715:9349521:-1 11/11 None
GENEFINDER00000012097 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9347715:9349521:-1 11/11 None
K07B1.7a ENSEMBL cdna:known chromosome:CEL140:V:9347355:9348962:-1 gene:K07B1.7 11/11 None
K07B1.7b ENSEMBL cdna:known chromosome:CEL140:V:9347696:9349521:-1 gene:K07B1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9347354-9349521(-) 100.0 100.0
Public Domain and Genome References
Ensembl K07B1.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505419 K07B1.7a [Caenorhabditis elegans] 0.0
blast T15256 hypothetical protein K07B1.7 - Caenorhabditis elegans 0.0
blast AAB54241 Hypothetical protein K07B1.7a [Caenorhabditis elegans] 0.0
blast AAL08042 Hypothetical protein K07B1.7b [Caenorhabditis elegans] ref|NP_505420.1| K07B1.7b [Caenorhabditis elegans] 0.0
blast CAE72158 Hypothetical protein CBG19258 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 4.3E-17
Pfam IPR000467 EMBL-EBI D111/G-patch domain 4.3E-17
Sequence
Target Sequence 
>C. ELEGANS:181580_AT
actacgagggaaaatcagcaggcgatatggatgcaaaagcagcaatagaaatgagaaatg
atgatcttatgcggtctgggaaactcgaacaatcggctttcacaaagaaaagaaaccccc
ataatcttggcacaacgcgaaaaagaagaaacagtgatggtggtggatcctccgaaaaag
catctgaaaatcttcaaaaaggaattggaggttctatgctggctaaaatgggttggaaac
ctggaactgggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACGAGGGAAAATCAGCAGGCGA 601 101 1004 Antisense
CAGGCGATATGGATGCAAAAGCAGC 324 207 1022 Antisense
AATGATGATCTTATGCGGTCTGGGA 702 163 1060 Antisense
GCGGTCTGGGAAACTCGAACAATCG 583 291 1074 Antisense
CGAACAATCGGCTTTCACAAAGAAA 266 251 1089 Antisense
AGAAACCCCCATAATCTTGGCACAA 79 73 1114 Antisense
CCCCCATAATCTTGGCACAACGCGA 565 259 1119 Antisense
ACAGTGATGGTGGTGGATCCTCCGA 303 107 1154 Antisense
GTGGATCCTCCGAAAAAGCATCTGA 77 491 1166 Antisense
AATTGGAGGTTCTATGCTGGCTAAA 207 177 1206 Antisense
TGGGTTGGAAACCTGGAACTGGGCT 603 551 1232 Antisense
Sequence Source Affymetrix Proprietary Database