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[181579_at]

Description Y43F4B.1 /REP_DB=WormBase Gene ID /WP=CE16626 /TR=O62447 /GB=CAA16330.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 45      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 140.1
(3)
M 		130.2
(2.2)
A 		89.8
(-1)
A 		64.6
(-3)
A 		76
B 97.7
(3)
A 		69.4
(-0)
A 		66.7
(-0.3)
A 		41.4
(-3)
A 		56
C 115.4
(3)
A 		82.4
(-1.1)
A 		66.7
(-3)
A 		90
(-0.1)
A 		49
avr 117.7
(3) 		94
(0.3) 		74.4
(-2) 		65.3
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 32
(-2)
A 		86.4
(0.5)
A 		10.6
(-3)
A 		76.6
(0.1)
A 		82.2
(0.3)
A 		140.1
(3)
P 		130
B 46.3
(-3)
A 		71.1
(-0.4)
M 		104.4
(3)
A 		72.3
(-0.3)
A 		75.6
(0)
A 		63.8
(-1.2)
A 		58
C 128.1
(0.8)
A 		72.6
(-2.4)
A 		96.5
(-1)
A 		98.6
(-0.9)
A 		165.9
(3)
P 		62.7
(-3)
A 		103
avr 68.8
(-3) 		76.7
(-1.8) 		70.5
(-2.7) 		82.5
(-0.9) 		107.9
(3) 		88.9
(0.1) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 51
(3)
M 		28.3
(-0.3)
A 		23.5
(-1)
A 		9.5
(-3)
A 		42
B 31.2
(3)
A 		17.1
(-0.8)
A 		15.5
(-1.2)
A 		8.8
(-3)
A 		22
C 38.2
(3)
A 		23.7
(-0.8)
A 		23.2
(-0.9)
A 		15.2
(-3)
A 		23
avr 40.1
(3) 		23
(-0.6) 		20.7
(-1) 		11.2
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 5.9
(-2.3)
A 		30.7
(2.4)
A 		2.3
(-3)
A 		19.4
(0.2)
A 		24.8
(1.2)
A 		34.1
(3)
P 		32
B 16.1
(-3)
A 		23.7
(0.1)
M 		25.4
(0.8)
A 		19.1
(-1.8)
A 		30.7
(3)
A 		23.8
(0.2)
A 		15
C 47.5
(1.9)
A 		22.1
(-2.6)
A 		24.6
(-2.2)
A 		19.8
(-3)
A 		53.7
(3)
P 		21
(-2.8)
A 		34
avr 23.2
(-1.2) 		25.5
(-0.4) 		17.4
(-3) 		19.4
(-2.4) 		36.4
(3) 		26.3
(-0.2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7201
Sequence Type Exemplar sequence
Representative Public ID Y43F4B.1 NCBI
Target Description Y43F4B.1 /REP_DB=WormBase Gene ID /WP=CE16626 /TR=O62447 /GB=CAA16330.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067336 NCBI Caenorhabditis elegans Y43F4B.1 (Y43F4B.1) mRNA, complete cds. 11/11 None
SNAP00000007797 ENSEMBL cdna:SNAP chromosome:CEL140:III:13286508:13292593:-1 11/11 None
GENEFINDER00000007806 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13287594:13292593:-1 11/11 None
Y43F4B.1 ENSEMBL cdna:known chromosome:CEL140:III:13287111:13289377:-1 gene:Y43F4B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13287106-13289289(-) 90.24 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F4B.1
Entrez Gene 176745 Entrez gene
SwissProt O62447 EMBL-EBI
WormBase CE16626 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16330 Hypothetical protein Y43F4B.1 [Caenorhabditis elegans] ref|NP_499737.1| Y43F4B.1 [Caenorhabditis elegans] 0.0
blast CAA16330 Hypothetical protein Y43F4B.1 [Caenorhabditis elegans] ref|NP_499737.1| Y43F4B.1 [Caenorhabditis elegans] 1.0E-161
blast CAA16332 Hypothetical protein Y43F4B.3 [Caenorhabditis elegans] ref|NP_499738.1| Y43F4B.3 [Caenorhabditis elegans] 1.0E-118
blast CAE65308 Hypothetical protein CBG10227 [Caenorhabditis briggsae] 8.0E-65
blast CAE65308 Hypothetical protein CBG10227 [Caenorhabditis briggsae] 4.0E-40
blast CAE69915 Hypothetical protein CBG16272 [Caenorhabditis briggsae] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.3E-10
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.2E-26
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.3E-10
Sequence
Target Sequence 
>C. ELEGANS:181579_AT
atgcgacgctaggttcatgttcctctacgatccccacgatgtcaccaatctggagtgtac
accggacgggaaagttgacttcacggatttcaaaattgacaatgctcgaatcgtgatgga
atgctcggacgcgtgtggctgcagtctggattgcccacgaagatcgcttcaacgaggaca
gcagcatccactcgccgtctactatgaagggcctgaaaaagggttcggcgttcgtgctgc
tgcaaacatcaaggctggagaactagtgtgtgaatacactggagacgtgacactgctgcc
gacgtcggatcctgtcgcaagttcatcgacgaaaacggatgatggcgaggaacaagagaa
tccagaggccccggagagagttgactcatcgtacgatgctgcgttcaatgcgatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGACGCTAGGTTCATGTTCCTC 431 41 438 Antisense
TCCCCACGATGTCACCAATCTGGAG 68 597 468 Antisense
TGATGGAATGCTCGGACGCGTGTGG 335 567 551 Antisense
GTGTGGCTGCAGTCTGGATTGCCCA 595 487 570 Antisense
GATTGCCCACGAAGATCGCTTCAAC 636 433 586 Antisense
AACGAGGACAGCAGCATCCACTCGC 275 145 608 Antisense
TCCACTCGCCGTCTACTATGAAGGG 319 589 624 Antisense
CACTGGAGACGTGACACTGCTGCCG 455 199 714 Antisense
TCGGATCCTGTCGCAAGTTCATCGA 142 607 742 Antisense
GAGGCCCCGGAGAGAGTTGACTCAT 259 403 802 Antisense
ACGATGCTGCGTTCAATGCGATGGA 536 93 830 Antisense
Sequence Source Affymetrix Proprietary Database