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[181578_at]

Description F56C9.6 /REP_DB=WormBase Gene ID /WP=CE01325 /TR=Q20863 /GB=AAK18961.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 204
(-3)
P 		386.9
(2.3)
P 		411.1
(3)
P 		400.4
(2.7)
P 		207
B 162
(-3)
P 		366
(0.6)
P 		504.2
(3)
P 		351.7
(0.3)
P 		342
C 176.5
(-3)
P 		295.1
(0)
P 		411.7
(3)
P 		321.4
(0.7)
P 		235
avr 180.8
(-3) 		349.3
(0.9) 		442.3
(3) 		357.8
(1.1) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1359
1 2 3 4 5 6 range
A 157.9
(-3)
P 		173.9
(-2.9)
P 		254
(-2.6)
P 		453.1
(-1.6)
P 		1084.2
(1.3)
P 		1465.2
(3)
P 		1307
B 124.4
(-3)
P 		143
(-2.9)
P 		269.8
(-2.3)
P 		483.7
(-1.3)
P 		1096.3
(1.5)
P 		1410.7
(3)
P 		1286
C 127.3
(-3)
P 		157.2
(-2.9)
P 		247.7
(-2.5)
P 		540.1
(-1.2)
P 		898.5
(0.4)
P 		1483.1
(3)
P 		1356
avr 136.5
(-3) 		158
(-2.9) 		257.2
(-2.4) 		492.3
(-1.4) 		1026.3
(1.1) 		1453
(3) 		1317
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 74.3
(-1.1)
P 		84
(0.1)
P 		107.5
(3)
P 		58.6
(-3)
P 		49
B 51.7
(-3)
P 		90.4
(0.6)
P 		116.8
(3)
P 		75
(-0.9)
P 		65
C 58.4
(-2.7)
P 		84.8
(-0.9)
P 		143.5
(3)
P 		54.2
(-3)
P 		89
avr 61.5
(-3) 		86.4
(-0.6) 		122.6
(3) 		62.6
(-2.9) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 29.1
(-3)
P 		61.9
(-2.4)
P 		55.3
(-2.5)
P 		114.9
(-1.4)
P 		327.2
(2.5)
P 		356.7
(3)
P 		328
B 43.3
(-3)
P 		47.6
(-2.9)
P 		65.5
(-2.7)
P 		128.1
(-1.9)
P 		445.4
(2)
P 		526.1
(3)
P 		483
C 47.2
(-3)
P 		48
(-3)
P 		63.1
(-2.8)
P 		108.6
(-2.2)
P 		290.7
(0.3)
P 		496.5
(3)
P 		449
avr 39.9
(-3) 		52.5
(-2.8) 		61.3
(-2.7) 		117.2
(-1.9) 		354.4
(1.5) 		459.8
(3) 		420
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7142
Sequence Type Exemplar sequence
Representative Public ID F56C9.6 NCBI
Target Description F56C9.6 /REP_DB=WormBase Gene ID /WP=CE01325 /TR=Q20863 /GB=AAK18961.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066209 NCBI Caenorhabditis elegans F56C9.6 (F56C9.6) mRNA, complete cds. 11/11 None
SNAP00000032850 ENSEMBL cdna:SNAP chromosome:CEL140:III:7309066:7310638:-1 11/11 None
GENEFINDER00000032868 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7309066:7310399:-1 11/11 None
F56C9.6 ENSEMBL cdna:known chromosome:CEL140:III:7308920:7310638:-1 gene:F56C9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7309063-7310636(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C9.6
Entrez Gene 176035 Entrez gene
SwissProt Q20863 EMBL-EBI
WormBase CE01325 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18961 Hypothetical protein F56C9.6 [Caenorhabditis elegans] ref|NP_498610.1| F56C9.6 [Caenorhabditis elegans] 0.0
blast AAK18961 Hypothetical protein F56C9.6 [Caenorhabditis elegans] ref|NP_498610.1| F56C9.6 [Caenorhabditis elegans] 1.0E-176
blast AAK18961 Hypothetical protein F56C9.6 [Caenorhabditis elegans] ref|NP_498610.1| F56C9.6 [Caenorhabditis elegans] 1.0E-155
blast CAE57624 Hypothetical protein CBG00607 [Caenorhabditis briggsae] 2.0E-53
blast CAE57624 Hypothetical protein CBG00607 [Caenorhabditis briggsae] 5.0E-46
blast CAE57624 Hypothetical protein CBG00607 [Caenorhabditis briggsae] 6.0E-46
blast CAE69297 Hypothetical protein CBG15352 [Caenorhabditis briggsae] 3.0E-26
blast CAE69297 Hypothetical protein CBG15352 [Caenorhabditis briggsae] 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:181578_AT
tggagtcagttttccgtcgagaccaccattgacatctgaacattcgagtagtggagacag
ttacttcaacaacagccataaaacgacaccaaactacagacgcttcgcaaattcgaatga
tagctcgagggacaactctcaaatggaatataaggcagaaaacgatgccagccatacttc
ccaatcgtcaaaccgtttcggattcaattcccaaattaatcgtactgacatccatccacc
agcggcaaggcacacatttaatccagctgctgcatacaatggaaaaatcacgccggactt
tcgcttcaattacattccgaatgcagcagtgccagctccatcggtggttccagtgatagc
tactcatcctggtgttgcaccgccatctattgtgccctcaccgattcgtattggacaacg
ttacccaaaaagacctgataacatgccaaagccatcatctgagccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGTCAGTTTTCCGTCGAGACCA 684 547 417 Antisense
GTCGAGACCACCATTGACATCTGAA 124 475 432 Antisense
AACGACACCAAACTACAGACGCTTC 40 145 498 Antisense
CATACTTCCCAATCGTCAAACCGTT 367 199 589 Antisense
ATTAATCGTACTGACATCCATCCAC 35 13 631 Antisense
GGCACACATTTAATCCAGCTGCTGC 451 535 665 Antisense
GAAAAATCACGCCGGACTTTCGCTT 518 355 698 Antisense
ATTCCGAATGCAGCAGTGCCAGCTC 510 5 730 Antisense
ATAGCTACTCATCCTGGTGTTGCAC 151 23 772 Antisense
TGCCCTCACCGATTCGTATTGGACA 630 583 809 Antisense
TGCCAAAGCCATCATCTGAGCCGAA 708 585 860 Antisense
Sequence Source Affymetrix Proprietary Database