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[181577_at]

Description F55A4.2 /REP_DB=WormBase Gene ID /WP=CE11101 /TR=Q94236 /GB=AAB07560.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 45      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 220.7
(3)
A 		175.1
(1.7)
A 		34.3
(-2.4)
A 		15.1
(-3)
A 		206
B 244.2
(3)
P 		162.2
(0.5)
A 		114.5
(-0.9)
A 		43.7
(-3)
A 		201
C 226.6
(3)
P 		130.9
(0.1)
A 		106.8
(-0.6)
A 		28.1
(-3)
A 		199
avr 230.5
(3) 		156.1
(0.8) 		85.2
(-1.3) 		29
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 218.9
(2.9)
A 		223.6
(3)
P 		114.9
(-0.3)
A 		99.6
(-0.8)
A 		85.7
(-1.2)
A 		25.6
(-3)
A 		198
B 207.6
(3)
P 		157.5
(0.9)
P 		93
(-1.7)
A 		66.1
(-2.8)
A 		117
(-0.7)
A 		61.6
(-3)
A 		146
C 169.5
(1.6)
P 		218.3
(3)
A 		98.2
(-0.4)
A 		84.6
(-0.8)
A 		84.5
(-0.8)
A 		7.7
(-3)
A 		211
avr 198.7
(3) 		199.8
(3) 		102
(-0.5) 		83.4
(-1.2) 		95.7
(-0.7) 		31.6
(-3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 80.4
(3)
A 		38
(-0.3)
A 		9
(-2.5)
A 		2.2
(-3)
A 		78
B 77.9
(3)
P 		40.1
(-0.3)
A 		26.5
(-1.5)
A 		9.3
(-3)
A 		69
C 75
(3)
P 		37.6
(-0.2)
A 		37.2
(-0.2)
A 		4.7
(-3)
A 		70
avr 77.8
(3) 		38.6
(-0.2) 		24.2
(-1.4) 		5.4
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 40.4
(-0.2)
A 		79.5
(3)
P 		25
(-1.5)
A 		25.2
(-1.4)
A 		25.8
(-1.4)
A 		6.2
(-3)
A 		73
B 72.2
(3)
P 		52.4
(0.8)
P 		22.6
(-2.4)
A 		17.5
(-3)
A 		47.5
(0.3)
A 		23
(-2.4)
A 		55
C 62.8
(2.6)
P 		66.6
(3)
A 		25
(-0.9)
A 		17
(-1.7)
A 		27.3
(-0.7)
A 		2.6
(-3)
A 		64
avr 58.5
(2.2) 		66.2
(3) 		24.2
(-1.5) 		19.9
(-2) 		33.5
(-0.5) 		10.6
(-3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181577_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18063
Sequence Type Exemplar sequence
Representative Public ID F55A4.2 NCBI
Target Description F55A4.2 /REP_DB=WormBase Gene ID /WP=CE11101 /TR=Q94236 /GB=AAB07560.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075792 NCBI Caenorhabditis elegans F55A4.2 (F55A4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000039518 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1013179:1017500:-1 11/11 None
F55A4.2 ENSEMBL cdna:known chromosome:CEL140:X:1012728:1017564:-1 gene:F55A4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039510 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1015982-1017500(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A4.2
Entrez Gene 180454 Entrez gene
SwissProt Q94236 EMBL-EBI
WormBase CE31181 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB07560 Hypothetical protein F55A4.2 [Caenorhabditis elegans] ref|NP_508193.2| F55A4.2 [Caenorhabditis elegans] 0.0
blast AAB07560 Hypothetical protein F55A4.2 [Caenorhabditis elegans] ref|NP_508193.2| F55A4.2 [Caenorhabditis elegans] 1.0E-162
blast CAE63583 Hypothetical protein CBG08072 [Caenorhabditis briggsae] 1.0E-83
blast CAE63583 Hypothetical protein CBG08072 [Caenorhabditis briggsae] 2.0E-79
Sequence
Target Sequence 
>C. ELEGANS:181577_AT
agccttttgatattgtgccttcgcctcaaattttatccgattcgaagaaaactagttctc
caagaaggtgctgggccaagaattttcgccgatatttaaccgatggtattcttattattc
aattatttactttattcaattgcgcttcttcatctcatttatccaacacaattcctcctt
gtaaaaattttgggttttttgcgcagcatagcgacaatgtaactgatcgttgcacagttt
ggtctgatgacgtcattcctgaaatttgctcagctggcacacaatcacgtattagaatat
taaagcatgtgttcctttttccagagttacaaccgttatcattttttgaaatattcgccg
tcggcttgagaaacactgacacgtggcagttgaatgccggcgagaagggcactcttcgta
agcttaatgaagcctatcggtctttcgacacaactctttctcgtttcgactgccttccag
cggtggacactgcctccgcaacaagaccgttctcgccgaacgcaacttgtgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCTTTTGATATTGTGCCTTCGCC 523 83 275 Antisense
TGCCTTCGCCTCAAATTTTATCCGA 584 583 290 Antisense
GTGCTGGGCCAAGAATTTTCGCCGA 217 479 342 Antisense
CTTTATTCAATTGCGCTTCTTCATC 338 223 404 Antisense
CTTCTTCATCTCATTTATCCAACAC 511 221 419 Antisense
TATCCAACACAATTCCTCCTTGTAA 648 657 434 Antisense
TTTGCTCAGCTGGCACACAATCACG 134 665 539 Antisense
ATGTGTTCCTTTTTCCAGAGTTACA 333 47 581 Antisense
ATGAAGCCTATCGGTCTTTCGACAC 240 43 701 Antisense
TTTCGACACAACTCTTTCTCGTTTC 197 671 717 Antisense
TTCTCGCCGAACGCAACTTGTGATA 216 693 784 Antisense
Sequence Source Affymetrix Proprietary Database