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[181576_at]

Description F53C3.2 /REP_DB=WormBase Gene ID /WP=CE19440 /TR=Q9TXT8 /GB=AAC67452.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 22      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 27
(3)
A 		17
(-0.7)
A 		12.7
(-2.3)
A 		10.7
(-3)
A 		16
B 11.8
(0.8)
A 		4.8
(-2.2)
A 		3
(-3)
A 		16.9
(3)
A 		14
C 43.9
(1.3)
A 		25.2
(-0.7)
A 		4
(-3)
A 		59.6
(3)
A 		56
avr 27.6
(2.6) 		15.7
(-0.6) 		6.6
(-3) 		29.1
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 34.4
(0.9)
A 		22.7
(-0.6)
A 		5.6
(-2.7)
A 		3
(-3)
A 		7.3
(-2.5)
A 		51.6
(3)
A 		49
B 4.5
(-2.8)
A 		9
(-2.3)
A 		2.6
(-3)
A 		21
(-1.1)
A 		4.1
(-2.8)
A 		61.2
(3)
A 		59
C 44.5
(3)
A 		24.8
(0.1)
A 		8.2
(-2.3)
A 		40.3
(2.4)
A 		3.2
(-3)
A 		18.7
(-0.7)
A 		41
avr 27.8
(0.5) 		18.8
(-0.9) 		5.5
(-2.9) 		21.4
(-0.5) 		4.9
(-3) 		43.8
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.8
(3)
A 		3.7
(-1.5)
A 		3.3
(-1.8)
A 		1.6
(-3)
A 		8
B 3.8
(3)
A 		1.2
(-2)
A 		0.7
(-3)
A 		3.6
(2.6)
A 		3
C 14.5
(3)
A 		7.2
(-0.3)
A 		1.4
(-3)
A 		10.1
(1)
A 		13
avr 9.4
(3) 		4
(-1.3) 		1.8
(-3) 		5.1
(-0.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.3
(-0.2)
A 		8.1
(0.7)
A 		1.2
(-2.8)
A 		0.8
(-3)
A 		2.2
(-2.3)
A 		12.6
(3)
A 		12
B 1.5
(-2.8)
A 		3
(-2.4)
A 		0.6
(-3)
A 		5.6
(-1.6)
A 		1.7
(-2.7)
A 		22.8
(3)
A 		22
C 16.5
(3)
A 		7.6
(-0.4)
A 		2.1
(-2.6)
A 		8.1
(-0.3)
A 		1
(-3)
A 		6.3
(-0.9)
A 		16
avr 8.1
(0.2) 		6.2
(-0.7) 		1.3
(-3) 		4.8
(-1.3) 		1.6
(-2.9) 		13.9
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4542
Sequence Type Exemplar sequence
Representative Public ID F53C3.2 NCBI
Target Description F53C3.2 /REP_DB=WormBase Gene ID /WP=CE19440 /TR=Q9TXT8 /GB=AAC67452.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062292(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062292 NCBI Caenorhabditis elegans F53C3.2 (F53C3.2) mRNA, complete cds. 11/11 None
SNAP00000027226 ENSEMBL cdna:SNAP chromosome:CEL140:II:3907391:3908272:1 11/11 None
F53C3.2 ENSEMBL cdna:known chromosome:CEL140:II:3907160:3908272:1 gene:F53C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3907158-3908271(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53C3.2
Entrez Gene 186158 Entrez gene
SwissProt Q9TXT8 EMBL-EBI
WormBase CE19440 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67452 Hypothetical protein F53C3.2 [Caenorhabditis elegans] ref|NP_494693.1| F53C3.2 [Caenorhabditis elegans] 1.0E-180
blast AAC67452 Hypothetical protein F53C3.2 [Caenorhabditis elegans] ref|NP_494693.1| F53C3.2 [Caenorhabditis elegans] 1.0E-161
blast AAB37932 Hypothetical protein F08D12.8 [Caenorhabditis elegans] ref|NP_494357.1| F08D12.8 [Caenorhabditis elegans] 3.0E-22
blast AAB65271 Hypothetical protein F29A7.1 [Caenorhabditis elegans] ref|NP_494354.1| F29A7.1 [Caenorhabditis elegans] 7.0E-20
blast AAB37932 Hypothetical protein F08D12.8 [Caenorhabditis elegans] ref|NP_494357.1| F08D12.8 [Caenorhabditis elegans] 8.0E-14
blast AAB65271 Hypothetical protein F29A7.1 [Caenorhabditis elegans] ref|NP_494354.1| F29A7.1 [Caenorhabditis elegans] 7.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.2E-5
Sequence
Target Sequence 
>C. ELEGANS:181576_AT
caaggtggactgcttcaccgttcagcaatgctccgaaagctatcaacggagcattttccg
gaacttttctcctattaacacgtttataatctgtgcaaccggagctgagtctacaaaggc
aatttcgagtgctcttccacataatctgaaagatttcggatacgtgtccagaggtgccac
ttggaattttagcctggataacttacttttaagcaactcccggaatctggtggttattga
agcaagattttcattccctgacatcaacatgttcctaaaacattggctcaacggatccaa
tcgacgacttactaacgcttattttatttatacaacaccgctagtttcagaggatatttc
aaaaggattgccttttagcattccgtccgaagctgaaatctccaagcttccgagtgatct
tatggaacatcgagaaacaatgttccagttgaagaggaaattcgactcaaccgcgacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGGTGGACTGCTTCACCGTTCAG 44 185 450 Antisense
GAGCATTTTCCGGAACTTTTCTCCT 591 387 498 Antisense
GTGCAACCGGAGCTGAGTCTACAAA 448 481 542 Antisense
AAGGCAATTTCGAGTGCTCTTCCAC 448 161 565 Antisense
TAAGCAACTCCCGGAATCTGGTGGT 449 637 659 Antisense
GCAAGATTTTCATTCCCTGACATCA 494 321 691 Antisense
AATCGACGACTTACTAACGCTTATT 69 169 748 Antisense
AGGATTGCCTTTTAGCATTCCGTCC 305 55 813 Antisense
TCCGTCCGAAGCTGAAATCTCCAAG 291 595 831 Antisense
ATCTCCAAGCTTCCGAGTGATCTTA 221 33 847 Antisense
GGAAATTCGACTCAACCGCGACAAT 423 527 905 Antisense
Sequence Source Affymetrix Proprietary Database