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[181575_at]

Description Y9C9A.5 /REP_DB=WormBase Gene ID /WP=CE25655 /TR=Q9N2S9 /GB=AAF60930.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 62.9
(-0.9)
A 		73.6
(-0.3)
A 		26
(-3)
A 		133
(3)
P 		107
B 115.5
(3)
A 		32.2
(-2.5)
A 		25
(-3)
A 		109.7
(2.6)
A 		91
C 37.7
(-2.9)
A 		54.3
(-2.5)
A 		32.1
(-3)
A 		277
(3)
P 		245
avr 72
(-1.2) 		53.4
(-1.9) 		27.7
(-3) 		173.2
(3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 64
(3)
A 		36.6
(-1.8)
A 		58.9
(2.1)
A 		29.9
(-3)
A 		56.8
(1.7)
A 		51.6
(0.8)
A 		34
B 35.1
(-3)
A 		55.6
(1)
A 		38.5
(-2.3)
A 		45.4
(-1)
A 		63.2
(2.5)
A 		65.9
(3)
A 		31
C 44
(-2.3)
A 		91.6
(3)
P 		70.6
(0.7)
A 		84.4
(2.2)
A 		37.5
(-3)
A 		56.4
(-0.9)
A 		54
avr 47.7
(-3) 		61.3
(3) 		56
(0.7) 		53.2
(-0.6) 		52.5
(-0.9) 		58
(1.5) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 22.9
(3)
A 		16
(0.4)
A 		6.8
(-3)
A 		19.5
(1.7)
P 		16
B 36.8
(3)
A 		7.9
(-2.6)
A 		5.8
(-3)
A 		23.4
(0.4)
A 		31
C 12.5
(-2.8)
A 		15.6
(-2.3)
A 		11.2
(-3)
A 		46.7
(3)
P 		36
avr 24.1
(1.4) 		13.2
(-1.6) 		7.9
(-3) 		29.9
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 11.8
(-0.3)
A 		13
(0.4)
A 		12.8
(0.3)
A 		7.6
(-3)
A 		17.1
(3)
A 		12.6
(0.2)
A 		10
B 12.2
(-1.9)
A 		18.5
(0.4)
A 		9.3
(-3)
A 		12
(-2)
A 		25.7
(3)
A 		24.6
(2.6)
A 		16
C 16.3
(-1.4)
A 		27.9
(3)
P 		18
(-0.8)
A 		17
(-1.1)
A 		12.1
(-3)
A 		18.9
(-0.4)
A 		16
avr 13.4
(-2.1) 		19.8
(3) 		13.4
(-2.1) 		12.2
(-3) 		18.3
(1.8) 		18.7
(2.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181575_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10365
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.5 NCBI
Target Description Y9C9A.5 /REP_DB=WormBase Gene ID /WP=CE25655 /TR=Q9N2S9 /GB=AAF60930.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068279 NCBI Caenorhabditis elegans Y9C9A.5 (Y9C9A.5) mRNA, complete cds. 11/11 None
GENEFINDER00000021415 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4942079:4948508:1 9/11 None
Y9C9A.5 ENSEMBL cdna:known chromosome:CEL140:IV:4941971:4944578:1 gene:Y9C9A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021395 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4941976-4944584(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y9C9A.5
Entrez Gene 189411 Entrez gene
SwissProt Q9N2S9 EMBL-EBI
WormBase CE35143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500680 Y9C9A.5 [Caenorhabditis elegans] gb|AAF60930.2| Hypothetical protein Y9C9A.5 [Caenorhabditis elegans] 0.0
blast NP_001023592 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAF60929.1| Seven tm receptor protein 169, isoform a [Caenorhabditis elegans] 0.0
blast NP_001023593 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAX22280.1| Seven tm receptor protein 169, isoform b [Caenorhabditis elegans] 1.0E-179
blast NP_500680 Y9C9A.5 [Caenorhabditis elegans] gb|AAF60930.2| Hypothetical protein Y9C9A.5 [Caenorhabditis elegans] 1.0E-143
blast NP_001023592 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAF60929.1| Seven tm receptor protein 169, isoform a [Caenorhabditis elegans] 1.0E-135
blast NP_500679 Seven TM Receptor family member (str-168) [Caenorhabditis elegans] gb|AAF60931.2| Seven tm receptor protein 168 [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.8E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.7E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.7E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-11
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.2E-4
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500680.2 7 10-30,43-65,88-110,130-152,201-223,248-270,285-307
Y9C9A.5 7 10-30,43-65,88-110,130-152,201-223,248-270,285-307
GENEFINDER00000021415 14 7-25,35-57,69-91,140-162,187-209,224-246,258-274,294-316,329-351,375-397,425-447,496-518,543-565,580-602
Sequence
Target Sequence 
>C. ELEGANS:181575_AT
ttggtttatatctcccttactagcaggtttcatttggttcacattggcttggtttacaca
gtatcctagcccacaaatgaatgactacatcagtgaaatagtatctacaaattatggagc
caacgtgtcggatattacttactgtggctgcgtgttctatccactcgatgaaactggagt
tcctcatttggattacaagcatctatgggcatatgttggatattgcattactatgggaac
attatttctcactcttgtcatatttggtctgaaaacctacaagctggtccgtgaactttc
aaaacatggggagtccgagtacacctacaaattgcaatcacaactttttagagcattagt
ggctcaggcattcatcccaataacattcctatttcttccaattggaatacttttcacagc
acctcttcttcattttgatatcgaaccggctagtttcttggtcactatattctattcaat
atatccagctgttgatccacttcctattatttttatagttgtggattatagagatggatt
ggtcgaacttctacgctacttcattggtcagcggaacaattacataactccttctacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTTTATATCTCCCTTACTAGCA 536 701 336 Antisense
GGTTCACATTGGCTTGGTTTACACA 705 505 371 Antisense
CACAGTATCCTAGCCCACAAATGAA 102 197 392 Antisense
GGAGCCAACGTGTCGGATATTACTT 695 521 451 Antisense
TATTACTTACTGTGGCTGCGTGTTC 483 657 468 Antisense
GCGTGTTCTATCCACTCGATGAAAC 260 293 485 Antisense
CCTACAAGCTGGTCCGTGAACTTTC 280 269 611 Antisense
ACATGGGGAGTCCGAGTACACCTAC 487 105 639 Antisense
CATTAGTGGCTCAGGCATTCATCCC 493 215 689 Antisense
GAACTTCTACGCTACTTCATTGGTC 184 351 880 Antisense
GAACAATTACATAACTCCTTCTACC 530 353 909 Antisense
Sequence Source Affymetrix Proprietary Database