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[181574_at]

Description C55H1.1 /REP_DB=WormBase Gene ID /WP=CE06995 /TR=Q18872 /GB=AAA97987.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 16.8
(-2.1)
A 		25
(-0.9)
A 		10.9
(-3)
A 		50.3
(3)
A 		39
B 8
(-3)
A 		16
(-0.3)
A 		20.6
(1.3)
A 		25.7
(3)
A 		18
C 7.5
(-3)
A 		26.8
(-1.7)
A 		17.9
(-2.3)
A 		96.9
(3)
A 		89
avr 10.8
(-3) 		22.6
(-1.5) 		16.5
(-2.3) 		57.6
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 6.7
(-2.6)
A 		4.3
(-3)
A 		37.3
(2.8)
A 		5.3
(-2.8)
A 		38.6
(3)
A 		5.2
(-2.8)
A 		34
B 7
(3)
A 		3.3
(-2.7)
A 		3.7
(-2.1)
A 		3.1
(-3)
A 		4.8
(-0.4)
A 		3.4
(-2.5)
A 		4
C 22.6
(3)
A 		12.1
(-0.4)
A 		8.1
(-1.7)
A 		19.9
(2.1)
A 		7.8
(-1.8)
A 		4.1
(-3)
A 		19
avr 12.1
(0.7) 		6.6
(-1.9) 		16.4
(2.7) 		9.4
(-0.6) 		17.1
(3) 		4.2
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.1
(1.3)
A 		5.4
(0.3)
A 		2.9
(-3)
A 		7.4
(3)
A 		5
B 2.6
(-3)
A 		4
(-0.1)
A 		4.8
(1.6)
A 		5.5
(3)
A 		3
C 2.5
(-3)
A 		7.7
(-0.7)
A 		6.2
(-1.4)
A 		16.3
(3)
A 		14
avr 3.7
(-3) 		5.7
(-1) 		4.6
(-2.1) 		9.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.5
(-2.8)
A 		8.1
(0.9)
A 		1.3
(-2.9)
A 		11.7
(3)
A 		1.3
(-2.9)
A 		11
B 2.4
(3)
A 		1.1
(-1.9)
A 		0.9
(-2.6)
A 		0.8
(-3)
A 		2
(1.5)
A 		1.3
(-1.1)
A 		2
C 8.4
(3)
A 		3.7
(-1)
A 		2.1
(-2.4)
A 		4
(-0.8)
A 		2.5
(-2.1)
A 		1.4
(-3)
A 		7
avr 4
(1) 		2.1
(-1.8) 		3.7
(0.5) 		2
(-2) 		5.4
(3) 		1.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181574_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12107
Sequence Type Exemplar sequence
Representative Public ID C55H1.1 NCBI
Target Description C55H1.1 /REP_DB=WormBase Gene ID /WP=CE06995 /TR=Q18872 /GB=AAA97987.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072343 NCBI Caenorhabditis elegans C55H1.1 (C55H1.1) mRNA, complete cds. 11/11 None
C55H1.1 ENSEMBL cdna:known chromosome:CEL140:V:6853132:6854494:1 gene:C55H1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025883 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025885 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6853132-6854495(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55H1.1
Entrez Gene 183854 Entrez gene
SwissProt Q18872 EMBL-EBI
WormBase CE06995 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97987 Hypothetical protein C55H1.1 [Caenorhabditis elegans] ref|NP_504744.1| C55H1.1 [Caenorhabditis elegans] 1.0E-142
blast AAB42343 Udp-glucuronosyltransferase protein 25 [Caenorhabditis elegans] ref|NP_491438.1| C10H11.3 [Caenorhabditis elegans] 1.0E-71
blast CAE60364 Hypothetical protein CBG03962 [Caenorhabditis briggsae] 3.0E-70
Sequence
Target Sequence 
>C. ELEGANS:181574_AT
ttgaaccgcaacttgtctgtggtctcgggtacatgcacgctctaggaattgaaaaaatca
taatggcatcgttgtatatgttcttcgacggtgttctttctacgattggggaatctatcg
atttcagttatgttcctggaatgtacagcaaatgtggagataagatgggtctaactgaaa
aatttgggacaaagaaactgaaatttacaaaaaaatatttgggagatagcgttccacatt
ggagagatttaatgccagcttgctcattgttcttcacaaattcaattccatatgtagact
ttccaagaactattacccaaaagacagttccaattggtggaatttccgtgaatatggaag
aaataaaatcgaaaaggctcccagtggagtggagtaaagttttggataaaagaccacaaa
caatgctaatctcttttggttcattgataatgtggatatgccttcacagttcaggcaaaa
actccaaaaactccactccatattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAACCGCAACTTGTCTGTGGTCT 152 699 311 Antisense
TCTGTGGTCTCGGGTACATGCACGC 392 607 326 Antisense
GTACATGCACGCTCTAGGAATTGAA 587 459 339 Antisense
GGCATCGTTGTATATGTTCTTCGAC 236 537 375 Antisense
TTCTTCGACGGTGTTCTTTCTACGA 66 689 391 Antisense
ATCTATCGATTTCAGTTATGTTCCT 680 31 423 Antisense
GGGAGATAGCGTTCCACATTGGAGA 448 493 531 Antisense
TAATGCCAGCTTGCTCATTGTTCTT 40 637 560 Antisense
ATGCTAATCTCTTTTGGTTCATTGA 306 43 733 Antisense
GTGGATATGCCTTCACAGTTCAGGC 259 489 762 Antisense
TCCAAAAACTCCACTCCATATTCAA 696 585 793 Antisense
Sequence Source Affymetrix Proprietary Database