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[181573_at]

Description K05F1.8 /REP_DB=WormBase Gene ID /WP=CE02812 /TR=Q21245 /GB=AAA68715.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 24.9
(-2.5)
P 		21.7
(-2.8)
A 		19.1
(-3)
A 		89.8
(3)
P 		71
B 18.7
(-1.3)
P 		8
(-3)
A 		15.8
(-1.7)
A 		44.8
(3)
P 		37
C 17.8
(-1.2)
A 		1.1
(-3)
A 		23
(-0.7)
A 		57.9
(3)
P 		57
avr 20.5
(-1.9) 		10.3
(-3) 		19.3
(-2) 		64.2
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 34.3
(2.2)
A 		16.2
(-1.3)
A 		29
(1.1)
A 		7.5
(-3)
A 		25.3
(0.4)
A 		38.7
(3)
A 		31
B 10.3
(-1.5)
A 		26.5
(1.6)
A 		2.2
(-3)
A 		11.9
(-1.2)
A 		30.6
(2.4)
P 		34
(3)
A 		32
C 23.7
(1.2)
A 		33
(3)
A 		1.7
(-3)
A 		29.1
(2.3)
A 		21.2
(0.7)
A 		27.8
(2)
P 		31
avr 22.8
(0.1) 		25.2
(0.8) 		11
(-3) 		16.2
(-1.6) 		25.7
(0.9) 		33.5
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.1
(0.1)
P 		4.7
(-3)
A 		5
(-2.8)
A 		13.1
(3)
P 		8
B 5.9
(0.1)
P 		2
(-3)
A 		3.7
(-1.6)
A 		9.5
(3)
P 		8
C 5.9
(0.5)
A 		0.3
(-3)
A 		8
(1.9)
A 		9.8
(3)
P 		10
avr 7
(0.3) 		2.3
(-3) 		5.6
(-0.7) 		10.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.3
(0.5)
A 		5.8
(0.1)
A 		6.3
(0.5)
A 		1.9
(-3)
A 		7.6
(1.6)
A 		9.4
(3)
A 		8
B 3.6
(-1.5)
A 		8.8
(1.1)
A 		0.5
(-3)
A 		3.1
(-1.7)
A 		12.4
(2.9)
P 		12.7
(3)
A 		12
C 8.8
(2.2)
A 		10.1
(3)
A 		0.4
(-3)
A 		5.9
(0.4)
A 		6.9
(1)
A 		9.3
(2.5)
P 		10
avr 6.2
(-0.2) 		8.2
(1.3) 		2.4
(-3) 		3.6
(-2.1) 		9
(1.9) 		10.5
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5745
Sequence Type Exemplar sequence
Representative Public ID K05F1.8 NCBI
Target Description K05F1.8 /REP_DB=WormBase Gene ID /WP=CE02812 /TR=Q21245 /GB=AAA68715.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062744 NCBI Caenorhabditis elegans K05F1.8 (K05F1.8) mRNA, complete cds. 11/11 None
SNAP00000031246 ENSEMBL cdna:SNAP chromosome:CEL140:II:5799315:5799600:-1 11/11 None
GENEFINDER00000031256 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5799315:5799600:-1 11/11 None
K05F1.8 ENSEMBL cdna:known chromosome:CEL140:II:5799315:5799600:-1 gene:K05F1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5799311-5799597(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F1.8
Entrez Gene 187029 Entrez gene
SwissProt Q21245 EMBL-EBI
WormBase CE02812 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68715 Hypothetical protein K05F1.8 [Caenorhabditis elegans] ref|NP_495145.1| K05F1.8 [Caenorhabditis elegans] 7.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495145.1 1 35-57
K05F1.8 1 35-57
SNAP00000031246 1 35-57
GENEFINDER00000031256 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:181573_AT
gcgaagatgatggtagaggctctcatcaaagacctaattgctgtgatacaaccattatgt
caatgatgtgtttcttcatgatcattgcgttagctgctggaataccaataattcttgcat
caaaaggaatcgggattgatcttctggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAAGATGATGGTAGAGGCTCTCA 248 253 65 Antisense
GGTAGAGGCTCTCATCAAAGACCTA 175 505 76 Antisense
GGCTCTCATCAAAGACCTAATTGCT 571 539 82 Antisense
GACCTAATTGCTGTGATACAACCAT 137 383 95 Antisense
GCTGTGATACAACCATTATGTCAAT 58 295 104 Antisense
ATTATGTCAATGATGTGTTTCTTCA 397 13 118 Antisense
GTTTCTTCATGATCATTGCGTTAGC 107 451 134 Antisense
TGATCATTGCGTTAGCTGCTGGAAT 160 565 143 Antisense
TTGCGTTAGCTGCTGGAATACCAAT 143 701 149 Antisense
GGAATACCAATAATTCTTGCATCAA 467 533 163 Antisense
GGAATCGGGATTGATCTTCTGGAAA 457 533 190 Antisense
Sequence Source Affymetrix Proprietary Database