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[181570_at]

Description C24B5.5 /REP_DB=WormBase Gene ID /WP=CE20523 /TR=Q9TY01 /GB=AAD31546.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 26      6grp_cgc > 88      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 18.8
(-3)
A 		54.1
(-1.1)
A 		70.7
(-0.2)
A 		131.5
(3)
P 		113
B 62.5
(3)
A 		53.4
(1.2)
A 		47.2
(-0)
M 		32.3
(-3)
A 		30
C 45
(-1.8)
M 		82.9
(3)
M 		35.7
(-3)
A 		70.5
(1.4)
P 		47
avr 42.1
(-3) 		63.5
(0.6) 		51.2
(-1.5) 		78.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 19.9
(-3)
A 		29.8
(-1.8)
A 		40.1
(-0.6)
A 		45.6
(0.1)
M 		70.4
(3)
P 		24
(-2.5)
A 		51
B 18
(-2.1)
A 		11.9
(-3)
A 		13.6
(-2.8)
A 		38.4
(0.7)
A 		54.5
(3)
A 		49.5
(2.3)
P 		43
C 45.5
(0.8)
A 		38.5
(0.1)
A 		8.3
(-3)
A 		56.2
(1.9)
A 		44.7
(0.8)
A 		66.5
(3)
P 		58
avr 27.8
(-1.8) 		26.7
(-2) 		20.7
(-3) 		46.7
(1.4) 		56.5
(3) 		46.7
(1.4) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6.9
(-3)
A 		11.7
(-0.7)
A 		18.5
(2.7)
A 		19.2
(3)
P 		12
B 19.9
(3)
A 		13.2
(-0.1)
A 		10.9
(-1.2)
M 		6.9
(-3)
A 		13
C 14.9
(-1.5)
M 		23.8
(3)
M 		12.4
(-2.7)
A 		11.9
(-3)
P 		12
avr 13.9
(-0.9) 		16.2
(3) 		13.9
(-0.9) 		12.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 3.7
(-3)
A 		10.6
(-0.6)
A 		8.7
(-1.3)
A 		11.6
(-0.3)
M 		21.2
(3)
P 		5.8
(-2.3)
A 		18
B 6.3
(-2)
A 		4
(-2.8)
A 		3.3
(-3)
A 		10.2
(-0.8)
A 		22.2
(3)
A 		18.4
(1.8)
P 		19
C 16.9
(1.4)
A 		11.8
(-0.1)
A 		2.1
(-3)
A 		11.3
(-0.3)
A 		14.4
(0.7)
A 		22.3
(3)
P 		20
avr 9
(-1.2) 		8.8
(-1.3) 		4.7
(-3) 		11
(-0.4) 		19.3
(3) 		15.5
(1.4) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181570_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11577
Sequence Type Exemplar sequence
Representative Public ID C24B5.5 NCBI
Target Description C24B5.5 /REP_DB=WormBase Gene ID /WP=CE20523 /TR=Q9TY01 /GB=AAD31546.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072977 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-16) (pqn-16) mRNA, complete cds. 11/11 None
SNAP00000040462 ENSEMBL cdna:SNAP chromosome:CEL140:V:9176674:9177835:1 11/11 None
GENEFINDER00000040469 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9176674:9180417:1 11/11 None
C24B5.5 ENSEMBL cdna:known chromosome:CEL140:V:9176674:9177835:1 gene:C24B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9176674-9177836(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-16
Ensembl C24B5.5
Entrez Gene 182836 Entrez gene
SwissProt Q9TY01 EMBL-EBI
WormBase CE20523 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE72124 Hypothetical protein CBG19220 [Caenorhabditis briggsae] 0.0
blast AAM29664 Hypothetical protein C24B5.2a [Caenorhabditis elegans] ref|NP_741586.1| C24B5.2a [Caenorhabditis elegans] 0.0
blast AAD31546 Prion-like-(q/n-rich)-domain-bearing protein protein 16 [Caenorhabditis elegans] ref|NP_505378.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-16) [Caenorhabditis elegans] 2.0E-98
blast AAD31546 Prion-like-(q/n-rich)-domain-bearing protein protein 16 [Caenorhabditis elegans] ref|NP_505378.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-16) [Caenorhabditis elegans] 9.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 2.1E-37
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 8.5E-70
Sequence
Target Sequence 
>C. ELEGANS:181570_AT
ggaatgggattccagcagtctccagcaacgacaacagatgctcctattgttatccgcctt
gaaataacatcgggaagctcaaatagtcaatgtgctccaaaatgtattcaacaatgcaac
aatcaatgtgcatctcaaaatcagaaaacaaatcaatgcgccaatgaatgcaataaccag
tgtgcaaattcatgttcaccatcatctcagacatcatcctactcaaaatgcgtatctcaa
tgtgctgaacagtgttcgggatccaacacttccaacaatcagcagtgccaacaacaatgt
caaagtaacacctgtggacagtatcaatctacggtatccacaacaacaactactcccatc
attcagattgttctaaactcaagcgttctcaacagcggatctgaatgtgagccacaatgt
gagaattcctgtcagaatcaatgccaagctcaacaacagagccaacaacaatgtgcacaa
gcgtgtcagactggttgtgttgctcaatgtcagcctgcaaatgtatcgtgtatgcctgca
agcacgtcaacttgtcaatgtcagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATGGGATTCCAGCAGTCTCCAG 620 531 394 Antisense
AACAGATGCTCCTATTGTTATCCGC 335 137 426 Antisense
AATTCATGTTCACCATCATCTCAGA 504 175 580 Antisense
ATCTCAGACATCATCCTACTCAAAA 503 31 597 Antisense
AACAACTACTCCCATCATTCAGATT 403 135 738 Antisense
ACTCAAGCGTTCTCAACAGCGGATC 414 99 770 Antisense
TGTGCACAAGCGTGTCAGACTGGTT 78 557 865 Antisense
GTTGTGTTGCTCAATGTCAGCCTGC 494 437 887 Antisense
GTCAGCCTGCAAATGTATCGTGTAT 177 467 902 Antisense
GTGTATGCCTGCAAGCACGTCAACT 53 485 921 Antisense
GCACGTCAACTTGTCAATGTCAGCC 258 315 935 Antisense
Sequence Source Affymetrix Proprietary Database