[Home] | [Total List]

[181569_at]

Description C31E10.3 /REP_DB=WormBase Gene ID /WP=CE08503 /TR=Q93312 /GB=CAB01729.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 10.2
(-2.6)
A 		4.4
(-3)
A 		25.9
(-1.7)
A 		103.6
(3)
A 		99
B 43.5
(-0.8)
A 		23.4
(-2.7)
A 		19.9
(-3)
A 		83.7
(3)
A 		64
C 23.4
(-1.3)
A 		37.4
(-0.1)
A 		4.4
(-3)
A 		72.3
(3)
A 		68
avr 25.7
(-2.2) 		21.7
(-2.6) 		16.7
(-3) 		86.5
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 1.8
(-3)
A 		3.1
(-2.8)
A 		27.9
(1.6)
A 		1.8
(-3)
A 		35.7
(3)
A 		27.9
(1.6)
A 		34
B 19.4
(-1.6)
A 		28.8
(-0.4)
A 		53.6
(3)
A 		11.8
(-2.7)
A 		9.3
(-3)
A 		20.4
(-1.5)
A 		44
C 10.5
(-1.5)
A 		33.4
(3)
A 		5.1
(-2.6)
A 		23.8
(1.1)
A 		2.9
(-3)
A 		3.2
(-2.9)
A 		31
avr 10.6
(-3) 		21.8
(0.7) 		28.9
(3) 		12.5
(-2.4) 		16
(-1.2) 		17.2
(-0.8) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.7
(-1.9)
A 		1
(-3)
A 		6.8
(-0.5)
A 		15.2
(3)
A 		14
B 13.9
(1.2)
A 		5.8
(-2.5)
A 		4.6
(-3)
A 		17.8
(3)
A 		13
C 7.7
(0.5)
A 		10.8
(2.2)
A 		1.5
(-3)
A 		12.2
(3)
A 		11
avr 8.4
(-0.7) 		5.9
(-2.1) 		4.3
(-3) 		15.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.1
(-2.5)
A 		6.1
(0.3)
A 		0.4
(-2.9)
A 		10.8
(3)
A 		6.8
(0.7)
A 		11
B 6.7
(-0.8)
A 		9.6
(0.9)
A 		13
(3)
A 		3.1
(-3)
A 		3.8
(-2.6)
A 		7.6
(-0.3)
A 		10
C 3.9
(-1.1)
A 		10.2
(3)
A 		1.3
(-2.7)
A 		4.8
(-0.5)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		9
avr 3.6
(-1.9) 		7
(3) 		6.8
(2.7) 		2.8
(-3) 		5.2
(0.4) 		5.2
(0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18057
Sequence Type Exemplar sequence
Representative Public ID C31E10.3 NCBI
Target Description C31E10.3 /REP_DB=WormBase Gene ID /WP=CE08503 /TR=Q93312 /GB=CAB01729.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077930
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077930 NCBI Caenorhabditis elegans C31E10.3 (C31E10.3) mRNA, complete cds. None
C31E10.3 ENSEMBL cdna:known chromosome:CEL140:X:13986532:13988929:1 gene:C31E10.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13986531-13988929(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31E10.3
Entrez Gene 183087 Entrez gene
SwissProt Q93312 EMBL-EBI
WormBase CE28540 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01729 Hypothetical protein C31E10.3 [Caenorhabditis elegans] ref|NP_510331.1| C31E10.3 [Caenorhabditis elegans] 0.0
blast CAE63053 Hypothetical protein CBG07326 [Caenorhabditis briggsae] 2.0E-91
blast NP_503463 Y46H3D.4 [Caenorhabditis elegans] gb|AAK72307.1| Hypothetical protein Y46H3D.4 [Caenorhabditis elegans] 9.0E-63
Protein Domains
Database ID Description E-Value
scop a.3.1.monodomain cytochrome c All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c 3.5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.6E-6
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.6E-18
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.7E-11
Sequence
Target Sequence 
>C. ELEGANS:181569_AT
aaatgcatctattgatttgcgtgacaataagaatatgacacattttggattgaataactt
gacggaaatgataactccaggtcggtggtttacattaaactttgaaaacctgcatcccga
cttttgtctgacaatggaggaaatgcaaagatttactacagtaaacgcaaaattcgtgaa
aaatgaagcaaaatattgcaatattactataagagaagatggccagaaaacttgtgtttg
ggacaaaatgagcacgttggatagtcagtgtattcacgtgatgggacatgtgatcattag
cgcgggagacgaaagctatgttcaaaaacttcaaactgtgcggaatatatatggaagttt
gactattcaaaatacgagcttggaaaatttggcgtttcttggaaatttgacaaacgttgc
aaatctgaacggtttgttctccttccgcattttaaatttttcaaacaaagtgtgcatcgt
gcgtttatactcggtaaaacgttgcaacttcatagcacactcttgcaacttctcagacat
ccttttatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCATCTATTGATTTGCGTGAC 39 119 753 Antisense
GATAACTCCAGGTCGGTGGTTTACA 236 387 822 Antisense
TAAACTTTGAAAACCTGCATCCCGA 508 637 848 Antisense
TGCATCCCGACTTTTGTCTGACAAT 648 577 863 Antisense
GTCAGTGTATTCACGTGATGGGACA 648 465 1016 Antisense
GGGACATGTGATCATTAGCGCGGGA 680 493 1035 Antisense
GCAAATCTGAACGGTTTGTTCTCCT 614 315 1171 Antisense
GTGCATCGTGCGTTTATACTCGGTA 261 481 1224 Antisense
AACGTTGCAACTTCATAGCACACTC 325 145 1250 Antisense
CATAGCACACTCTTGCAACTTCTCA 169 215 1263 Antisense
GCAACTTCTCAGACATCCTTTTATG 451 319 1277 Antisense
Sequence Source Affymetrix Proprietary Database