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[181568_at]

Description C30G4.6 /REP_DB=WormBase Gene ID /WP=CE06902 /TR=Q18335 /GB=AAA93425.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 8.6
(-3)
A 		23.9
(-1.5)
A 		13.1
(-2.6)
A 		70.9
(3)
A 		62
B 65.7
(3)
A 		16.2
(-2.9)
A 		53.9
(1.6)
A 		15.6
(-3)
A 		50
C 61.6
(-0.8)
A 		101
(1.4)
A 		23.8
(-3)
A 		128.2
(3)
A 		104
avr 45.3
(-0.8) 		47
(-0.6) 		30.3
(-3) 		71.6
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 12.1
(-2.1)
A 		12.2
(-2)
A 		44.3
(3)
A 		14.2
(-1.7)
A 		6.7
(-2.9)
A 		6.1
(-3)
A 		38
B 64.7
(3)
A 		18.2
(-2)
A 		15.2
(-2.3)
A 		19.3
(-1.9)
A 		30.4
(-0.7)
A 		8.9
(-3)
A 		56
C 5.6
(-3)
A 		66.5
(3)
A 		28.6
(-0.7)
A 		9
(-2.7)
A 		48.8
(1.3)
A 		13.4
(-2.2)
A 		61
avr 27.5
(1.7) 		32.3
(3) 		29.4
(2.2) 		14.2
(-1.8) 		28.6
(2) 		9.5
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3.1
(-3)
A 		5.2
(-1.3)
A 		3.4
(-2.8)
A 		10.4
(3)
A 		7
B 21
(3)
A 		4
(-2.8)
A 		12.5
(0.1)
A 		3.3
(-3)
A 		18
C 20.4
(0.5)
A 		29
(3)
A 		8.3
(-3)
A 		21.6
(0.9)
A 		21
avr 14.8
(3) 		12.7
(1.1) 		8.1
(-3) 		11.8
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.2
(-2.5)
A 		4.3
(-0.9)
A 		9.6
(3)
A 		3.6
(-1.4)
A 		2
(-2.6)
A 		1.5
(-3)
A 		8
B 22.5
(3)
A 		6
(-2.2)
A 		3.7
(-2.9)
A 		5.1
(-2.4)
A 		12.3
(-0.2)
A 		3.3
(-3)
A 		19
C 2.1
(-2.9)
A 		20.3
(3)
A 		7.3
(-1.2)
A 		1.8
(-3)
A 		15.8
(1.5)
A 		4.5
(-2.1)
A 		19
avr 8.9
(1.9) 		10.2
(3) 		6.9
(0.2) 		3.5
(-2.7) 		10
(2.8) 		3.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17495
Sequence Type Exemplar sequence
Representative Public ID C30G4.6 NCBI
Target Description C30G4.6 /REP_DB=WormBase Gene ID /WP=CE06902 /TR=Q18335 /GB=AAA93425.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078359(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078359 NCBI Caenorhabditis elegans C30G4.6 (C30G4.6) mRNA, complete cds. 11/11 None
SNAP00000042123 ENSEMBL cdna:SNAP chromosome:CEL140:X:17075049:17077131:-1 10/11 None
GENEFINDER00000042124 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17075973:17077359:-1 11/11 None
C30G4.6 ENSEMBL cdna:known chromosome:CEL140:X:17075973:17077428:-1 gene:C30G4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17075972-17077428(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30G4.6
Entrez Gene 183059 Entrez gene
SwissProt Q18335 EMBL-EBI
WormBase CE06902 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA93425 Hypothetical protein C30G4.6 [Caenorhabditis elegans] ref|NP_510760.1| C30G4.6 [Caenorhabditis elegans] 0.0
blast AAA93425 Hypothetical protein C30G4.6 [Caenorhabditis elegans] ref|NP_510760.1| C30G4.6 [Caenorhabditis elegans] 1.0E-126
blast CAE69715 Hypothetical protein CBG15986 [Caenorhabditis briggsae] 1.0E-72
blast CAE69715 Hypothetical protein CBG15986 [Caenorhabditis briggsae] 3.0E-72
blast CAE72313 Hypothetical protein CBG19450 [Caenorhabditis briggsae] 2.0E-68
blast CAE72313 Hypothetical protein CBG19450 [Caenorhabditis briggsae] 2.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-7
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-7
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-7
Sequence
Target Sequence 
>C. ELEGANS:181568_AT
actggcaatcttctgatcgacgatcactttgatttcaaaaactcttataaactacatgac
gtcgaaaatatttacgggagcattactatccaaaacagctccatcagaaacttgaacttt
cttcccaatctcagcagaatccgatcaattaaggacaaggtggccccattcattgccgtc
aataattccaaactttttgaactttttactacaatgcagtttgaaggagctgaaagtgga
gtggcggtgactgtggaaaacaatgagtccttgatggtgcctgatatattatgttctttt
tttcggactagaaaatctccaattgttaaggataactatgacagttgtggcaccggagaa
aaaccttcaaagcacgacaaatattctctgaacgttgacgttttccacggacttccagtt
ttcaaagacgtttcagttgtcgaaacaaatcctgataacggaggagtccacaataatcct
tggaccagaaacaccacggattctgaatattatacggacgaggagacaagtactgaaaat
ttttgtatacaacctttcacaattgcttctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGGCAATCTTCTGATCGACGATC 707 95 466 Antisense
TTACTATCCAAAACAGCTCCATCAG 536 683 548 Antisense
GAAACTTGAACTTTCTTCCCAATCT 268 355 572 Antisense
TCTTCCCAATCTCAGCAGAATCCGA 646 617 585 Antisense
ATTAAGGACAAGGTGGCCCCATTCA 574 9 613 Antisense
GCCCCATTCATTGCCGTCAATAATT 626 283 628 Antisense
ATGAGTCCTTGATGGTGCCTGATAT 676 43 728 Antisense
TGAACGTTGACGTTTTCCACGGACT 362 545 854 Antisense
TTCCACGGACTTCCAGTTTTCAAAG 483 687 868 Antisense
ATCCTTGGACCAGAAACACCACGGA 79 37 941 Antisense
ACAACCTTTCACAATTGCTTCTTTT 327 113 1014 Antisense
Sequence Source Affymetrix Proprietary Database