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[181567_at]

Description F10D11.3 /REP_DB=WormBase Gene ID /WP=CE09325 /TR=O17778 /GB=CAB02915.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 11      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 15.2
(-2.4)
A 		48.9
(-0.6)
A 		3.9
(-3)
A 		114.7
(3)
P 		111
B 55.3
(0.6)
A 		37
(-2.4)
A 		33.4
(-3)
A 		70.2
(3)
P 		37
C 30
(-2.6)
M 		19
(-2.9)
A 		16.3
(-3)
A 		236.2
(3)
P 		220
avr 33.5
(-2.2) 		35
(-2.2) 		17.9
(-3) 		140.4
(3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 34.4
(0.5)
P 		2.9
(-3)
A 		45.6
(1.8)
P 		47.1
(1.9)
A 		47.9
(2)
A 		56.8
(3)
P 		54
B 35.1
(-1.2)
A 		11.7
(-3)
A 		25.6
(-1.9)
A 		41.6
(-0.7)
A 		45
(-0.4)
P 		89.7
(3)
P 		78
C 16.4
(-2.9)
A 		61.1
(0.7)
P 		14.7
(-3)
A 		50.6
(-0.2)
A 		26.7
(-2.1)
A 		90.6
(3)
P 		76
avr 28.6
(-2.6) 		25.2
(-3) 		28.6
(-2.6) 		46.4
(-0.6) 		39.9
(-1.4) 		79
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 5.5
(-1.3)
A 		10.6
(0.6)
A 		1
(-3)
A 		16.8
(3)
P 		16
B 17.6
(3)
A 		9.1
(-2.2)
A 		7.7
(-3)
A 		15
(1.4)
P 		10
C 9.9
(-2.2)
M 		5.5
(-3)
A 		5.7
(-3)
A 		39.8
(3)
P 		34
avr 11
(-1.1) 		8.4
(-1.9) 		4.8
(-3) 		23.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 6.3
(-0.6)
P 		1
(-3)
A 		9.9
(1)
P 		12
(1.9)
A 		14.5
(3)
A 		13.8
(2.7)
P 		14
B 12.2
(-1.3)
A 		3.9
(-3)
A 		6.2
(-2.5)
A 		11
(-1.6)
A 		18.3
(-0.1)
P 		33.5
(3)
P 		30
C 6.1
(-2.5)
A 		18.6
(0.4)
P 		3.7
(-3)
A 		10.2
(-1.5)
A 		8.6
(-1.9)
A 		30.3
(3)
P 		27
avr 8.2
(-2.5) 		7.8
(-2.6) 		6.6
(-3) 		11.1
(-1.6) 		13.8
(-0.8) 		25.9
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1098
Sequence Type Exemplar sequence
Representative Public ID F10D11.3 NCBI
Target Description F10D11.3 /REP_DB=WormBase Gene ID /WP=CE09325 /TR=O17778 /GB=CAB02915.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059891(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059891 NCBI Caenorhabditis elegans F10D11.3 (F10D11.3) mRNA, complete cds. 11/11 None
SNAP00000043611 ENSEMBL cdna:SNAP chromosome:CEL140:I:8448153:8448595:-1 9/11 None
GENEFINDER00000043617 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8448153:8448595:-1 9/11 None
F10D11.3 ENSEMBL cdna:known chromosome:CEL140:I:8447881:8448595:-1 gene:F10D11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040139 1/11 Cross Hyb Matching Probes None
GENEFINDER00000040146 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8447811-8448526(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10D11.3
Entrez Gene 184298 Entrez gene
SwissProt O17778 EMBL-EBI
WormBase CE09325 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02915 Hypothetical protein F10D11.3 [Caenorhabditis elegans] ref|NP_492292.1| F10D11.3 [Caenorhabditis elegans] 1.0E-53
blast CAB02915 Hypothetical protein F10D11.3 [Caenorhabditis elegans] ref|NP_492292.1| F10D11.3 [Caenorhabditis elegans] 5.0E-35
blast CAE73241 Hypothetical protein CBG20650 [Caenorhabditis briggsae] 8.0E-12
Sequence
Target Sequence 
>C. ELEGANS:181567_AT
atggctatggttgtcggaggaccggatgatcgagagtctattcgacttttgattggacag
attcgggatctttacaaagaaattgtgcaaatgagaaatgaagatagagagcaatataag
ctaatgaatgggcgggtggatgcattggaaaaggatagatctttgcgtaccaagaagcgt
cgcaagatcaataaggataagacaaagttggataaagaaaagaaatcggctgctcagaag
gttatttccacatcaaatatgacgaatactcccaagattacggacgagaacaagcaagct
ttttctccaatgtattattttttcctttttgttttaacatctgacttccttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTATGGTTGTCGGAGGACCGG 207 49 13 Antisense
GGAGGACCGGATGATCGAGAGTCTA 603 515 28 Antisense
GTCTATTCGACTTTTGATTGGACAG 88 467 48 Antisense
GATTGGACAGATTCGGGATCTTTAC 586 435 63 Antisense
GAATGGGCGGGTGGATGCATTGGAA 148 333 138 Antisense
GATCTTTGCGTACCAAGAAGCGTCG 553 417 170 Antisense
GAAGCGTCGCAAGATCAATAAGGAT 643 343 186 Antisense
GGCTGCTCAGAAGGTTATTTCCACA 139 541 240 Antisense
ATGACGAATACTCCCAAGATTACGG 28 21 271 Antisense
AGCAAGCTTTTTCTCCAATGTATTA 54 77 305 Antisense
TGTTTTAACATCTGACTTCCTTTTT 420 561 342 Antisense
Sequence Source Affymetrix Proprietary Database