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[181566_at]

Description F52D2.5 /REP_DB=WormBase Gene ID /WP=CE04626 /TR=Q9TXM4 /GB=AAC78156.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 31.8
(-2.8)
P 		29.1
(-3)
A 		30.9
(-2.9)
A 		126.2
(3)
A 		97
B 57
(3)
P 		7.7
(-3)
A 		9.1
(-2.8)
A 		55.4
(2.8)
P 		49
C 58.1
(-0.6)
P 		6.8
(-3)
A 		13.8
(-2.7)
A 		132.7
(3)
A 		126
avr 49
(-0.7) 		14.5
(-3) 		17.9
(-2.8) 		104.8
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 28.5
(-0.8)
A 		10.3
(-3)
A 		60.1
(3)
P 		37.7
(0.3)
A 		37.3
(0.3)
P 		24.6
(-1.3)
A 		50
B 32.2
(1.1)
P 		43
(3)
P 		28.2
(0.4)
P 		21.2
(-0.9)
A 		19.2
(-1.3)
P 		9.4
(-3)
A 		34
C 24.5
(-2)
P 		90.6
(3)
P 		26.9
(-1.8)
A 		17.1
(-2.6)
A 		21.9
(-2.2)
P 		11.7
(-3)
A 		79
avr 28.4
(-0.6) 		48
(3) 		38.4
(1.2) 		25.3
(-1.2) 		26.1
(-1) 		15.2
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 11.6
(-0.4)
P 		6.3
(-3)
A 		8.1
(-2.1)
A 		18.5
(3)
A 		12
B 18.2
(3)
P 		1.9
(-3)
A 		2.1
(-2.9)
A 		11.8
(0.6)
P 		16
C 19.2
(2.1)
P 		2
(-3)
A 		4.8
(-2.2)
A 		22.4
(3)
A 		20
avr 16.3
(2.5) 		3.4
(-3) 		5
(-2.3) 		17.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 5.3
(-2)
A 		3.7
(-3)
A 		13.1
(3)
P 		9.6
(0.8)
A 		11.3
(1.9)
P 		6
(-1.5)
A 		9
B 11.2
(1.3)
P 		14.3
(3)
P 		6.8
(-1.2)
P 		5.6
(-1.8)
A 		7.8
(-0.6)
P 		3.5
(-3)
A 		11
C 9.1
(-1.6)
P 		27.6
(3)
P 		6.8
(-2.2)
A 		3.4
(-3)
A 		7.1
(-2.1)
P 		3.9
(-2.9)
A 		24
avr 8.5
(-0.8) 		15.2
(3) 		8.9
(-0.5) 		6.2
(-2) 		8.7
(-0.6) 		4.5
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181566_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18073
Sequence Type Exemplar sequence
Representative Public ID F52D2.5 NCBI
Target Description F52D2.5 /REP_DB=WormBase Gene ID /WP=CE04626 /TR=Q9TXM4 /GB=AAC78156.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075963(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075963 NCBI Caenorhabditis elegans F52D2.5 (F52D2.5) mRNA, complete cds. 9/11 None
F52D2.5 ENSEMBL cdna:known chromosome:CEL140:X:1973790:1974517:-1 gene:F52D2.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016865 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1973787-1974517(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52D2.5
Entrez Gene 186104 Entrez gene
SwissProt Q9TXM4 EMBL-EBI
WormBase CE35718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78156 Hypothetical protein F52D2.5 [Caenorhabditis elegans] ref|NP_508364.2| F52D2.5 [Caenorhabditis elegans] 7.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508364.2 1 21-40
F52D2.5 1 21-40
Sequence
Target Sequence 
>C. ELEGANS:181566_AT
atggttttcgcacagtggctcaaaactatagctcaaaaagttacaattttccaaacttca
gttttctatcggcctcccagtctacttgtgttgtggaccctctgtctttctgcttttttt
caaaaatgtttaaataaatctgcgagtgcatcggaattgtctgttggcatgcatcggaat
tgtctgttggaaaaaactggaaaaaatacgaccagttgttgtttttcttttctcaatatg
ttggtgtttttgaaggtcctaataataatgacgtgttgcattgttggaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTTTTCGCACAGTGGCTCAAAA 569 51 13 Antisense
ACAGTGGCTCAAAACTATAGCTCAA 114 107 24 Antisense
CCTCCCAGTCTACTTGTGTTGTGGA 510 267 85 Antisense
AGTCTACTTGTGTTGTGGACCCTCT 487 59 91 Antisense
GTTTAAATAAATCTGCGAGTGCATC 44 445 140 Antisense
GCGAGTGCATCGGAATTGTCTGTTG 73 291 154 Antisense
GGAATTGTCTGTTGGCATGCATCGG 148 535 165 Antisense
GGCATGCATCGGAATTGTCTGTTGG 51 537 178 Antisense
TATGTTGGTGTTTTTGAAGGTCCTA 76 561 249 Antisense
GAAGGTCCTAATAATAATGACGTGT 363 333 264 Antisense
AATGACGTGTTGCATTGTTGGAAAC 79 165 279 Antisense
Sequence Source Affymetrix Proprietary Database