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[181565_at]

Description F56D6.2 /REP_DB=WormBase Gene ID /WP=CE17907 /TR=O61839 /GB=AAC17547.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_high_8_8 > 50      6grp_highest_nonorm > 43      6grp_total > 51      4grp_total > 61      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2303
1 2 3 4 range
A 2327.3
(3)
P 		1453.5
(0.6)
P 		1546.5
(0.9)
P 		99.7
(-3)
A 		2228
B 1819
(3)
P 		1458.4
(1.7)
P 		1557.7
(2.1)
P 		88.7
(-3)
P 		1730
C 2217.7
(3)
P 		1414.8
(0.8)
P 		1409.7
(0.8)
P 		24.5
(-3)
A 		2193
avr 2121.3
(3) 		1442.2
(1) 		1504.6
(1.2) 		71
(-3) 		2050

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1195
1 2 3 4 5 6 range
A 1047.2
(0.6)
P 		1212
(1.4)
P 		1417.2
(2.5)
P 		1508
(3)
P 		698.2
(-1.3)
P 		371.1
(-3)
P 		1137
B 1112
(1.2)
P 		949.4
(0)
P 		1366.6
(3)
P 		1315.7
(2.6)
P 		760.8
(-1.3)
P 		518.9
(-3)
P 		848
C 1265.2
(1.3)
P 		849.1
(-1)
P 		1565.8
(3)
P 		1180.1
(0.9)
P 		827.7
(-1.1)
P 		482.9
(-3)
P 		1083
avr 1141.5
(1.1) 		1003.5
(0.3) 		1449.9
(3) 		1334.6
(2.3) 		762.2
(-1.2) 		457.6
(-3) 		992
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 843
1 2 3 4 range
A 847.4
(3)
P 		315.5
(-0.8)
P 		404.3
(-0.2)
P 		14.6
(-3)
A 		833
B 580.1
(3)
P 		360.2
(0.6)
P 		361
(0.7)
P 		18.9
(-3)
P 		561
C 734.1
(3)
P 		406.8
(0.3)
P 		491.3
(1)
P 		4.1
(-3)
A 		730
avr 720.5
(3) 		360.8
(-0) 		418.9
(0.4) 		12.5
(-3) 		708

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 193.1
(-1.2)
P 		431.1
(3)
P 		308.6
(0.8)
P 		382.5
(2.1)
P 		210.7
(-0.9)
P 		90.3
(-3)
P 		341
B 386.9
(3)
P 		316
(0.8)
P 		331.8
(1.3)
P 		348.5
(1.8)
P 		309.1
(0.6)
P 		193.5
(-3)
P 		193
C 469
(3)
P 		259.1
(-1.1)
P 		398.5
(1.6)
P 		237.3
(-1.5)
P 		267.8
(-0.9)
P 		161.7
(-3)
P 		307
avr 349.7
(3) 		335.4
(2.6) 		346.3
(2.9) 		322.8
(2.2) 		262.5
(0.4) 		148.5
(-3) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10887
Sequence Type Exemplar sequence
Representative Public ID F56D6.2 NCBI
Target Description F56D6.2 /REP_DB=WormBase Gene ID /WP=CE17907 /TR=O61839 /GB=AAC17547.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068036 NCBI Caenorhabditis elegans F56D6.2 (F56D6.2) mRNA, complete cds. 11/11 A 
SNAP00000037038 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3922189:3925464:1 11/11 None
F56D6.2 ENSEMBL cdna:known chromosome:CEL140:IV:3922159:3925039:1 gene:F56D6.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068037 1/11 Cross Hyb Matching Probes A 
SNAP00000030665 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030680 1/11 Cross Hyb Matching Probes None
F56D6.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3922194-3924423(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D6.2
Entrez Gene 177151 Entrez gene
SwissProt Q8ITX4 EMBL-EBI
WormBase CE31546 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 0.0
blast E88656 protein F56D6.2 [imported] - Caenorhabditis elegans 0.0
blast AAF60602 Hypothetical protein Y46C8AL.5 [Caenorhabditis elegans] ref|NP_500442.3| Y46C8AL.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001017 EMBL-EBI Dehydrogenase, E1 component 6.0E-23
Sequence
Target Sequence 
>C. ELEGANS:181565_AT
tcaactttctcgcatttcattggatggatgccactacgcgaaagatatccgatttatgcc
gtcaatccaaaagtatcaggacaaggatctcagacactttctccaatgtccgtgccacga
tatgctcagtatttaatgatggtgacagttcaaagccatgtgccagttagcaatgttcaa
tcggccacccttggatggcacaaccaatcttccagctactcgggcatttttggaatgcaa
ccagcgggctgggaatatatcaatagtaatgacgatggaactcgtgaaaatatagacgcg
aacgtcttcaacatgaccatcgattatgtttacaccaacactgatgtcgaaaccatgcaa
atcagattctacagcccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTTTCTCGCATTTCATTGGAT 112 631 1042 Antisense
ATTTCATTGGATGGATGCCACTACG 497 15 1055 Antisense
ATTTATGCCGTCAATCCAAAAGTAT 600 13 1093 Antisense
ATGCCGTCAATCCAAAAGTATCAGG 649 39 1097 Antisense
GGACAAGGATCTCAGACACTTTCTC 357 525 1120 Antisense
GATCTCAGACACTTTCTCCAATGTC 596 417 1127 Antisense
ATGTCCGTGCCACGATATGCTCAGT 558 49 1147 Antisense
GTGCCACGATATGCTCAGTATTTAA 71 479 1153 Antisense
TAATGATGGTGACAGTTCAAAGCCA 424 635 1175 Antisense
GAAACCATGCAAATCAGATTCTACA 530 357 1390 Antisense
TGCAAATCAGATTCTACAGCCCATA 329 577 1397 Antisense
Sequence Source Affymetrix Proprietary Database