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[181564_at]

Description ZC155.5 /REP_DB=WormBase Gene ID /WP=CE17303 /TR=O01638 /GB=AAB52707.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 44      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 181.4
(0.9)
M 		206.6
(3)
A 		156.6
(-1.3)
P 		136.2
(-3)
A 		70
B 199.8
(0.7)
A 		249.5
(3)
M 		126.1
(-2.6)
A 		118.4
(-3)
P 		131
C 164.3
(1.5)
A 		195.3
(3)
P 		180.6
(2.3)
A 		72
(-3)
P 		123
avr 181.8
(1) 		217.1
(3) 		154.4
(-0.5) 		108.9
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 159.2
(-0.5)
P 		284.9
(3)
A 		273.7
(2.7)
A 		122.4
(-1.5)
A 		87.9
(-2.4)
P 		66.7
(-3)
M 		218
B 148.2
(-0.7)
M 		318.7
(3)
P 		184.8
(0.1)
P 		152.3
(-0.6)
A 		72.9
(-2.4)
A 		44.2
(-3)
A 		275
C 118.5
(-1.4)
A 		286.4
(3)
P 		117.1
(-1.5)
A 		83.8
(-2.4)
M 		92.7
(-2.1)
P 		59.6
(-3)
A 		227
avr 142
(-0.9) 		296.7
(3) 		191.9
(0.4) 		119.5
(-1.4) 		84.5
(-2.3) 		56.8
(-3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 66.1
(3)
M 		44.8
(0.2)
A 		40.9
(-0.3)
P 		19.9
(-3)
A 		46
B 63.7
(3)
A 		61.6
(2.7)
M 		29.2
(-2.4)
A 		25.2
(-3)
P 		39
C 54.4
(2)
A 		56.2
(2.2)
P 		62.9
(3)
A 		12.1
(-3)
P 		51
avr 61.4
(3) 		54.2
(2) 		44.3
(0.6) 		19.1
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 29.3
(-2.1)
P 		101.3
(3)
A 		59.6
(0.1)
A 		31
(-2)
A 		26.5
(-2.3)
P 		16.2
(-3)
M 		85
B 51.6
(-0.6)
M 		106.1
(3)
P 		44.9
(-1.1)
P 		40.3
(-1.4)
A 		29.6
(-2.1)
A 		16.5
(-3)
A 		90
C 43.9
(-0.7)
A 		87.4
(3)
P 		29.8
(-1.9)
A 		16.9
(-3)
M 		30
(-1.9)
P 		19.9
(-2.7)
A 		71
avr 41.6
(-1.2) 		98.3
(3) 		44.8
(-1) 		29.4
(-2.1) 		28.7
(-2.2) 		17.5
(-3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7495
Sequence Type Exemplar sequence
Representative Public ID ZC155.5 NCBI
Target Description ZC155.5 /REP_DB=WormBase Gene ID /WP=CE17303 /TR=O01638 /GB=AAB52707.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181964, NM_065706
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000027533 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5215498:5217526:-1 None
NM_065706 NCBI Caenorhabditis elegans ZC155.5a (ZC155.5) mRNA, complete cds. None
NM_181964 NCBI Caenorhabditis elegans ZC155.5b (ZC155.5) mRNA, complete cds. None
SNAP00000027525 ENSEMBL cdna:SNAP chromosome:CEL140:III:5215957:5217148:-1 None
ZC155.5a ENSEMBL cdna:known chromosome:CEL140:III:5215957:5217561:-1 gene:ZC155.5 None
ZC155.5b ENSEMBL cdna:known chromosome:CEL140:III:5215957:5217523:-1 gene:ZC155.5 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5215955-5217147(-) 96.56 100.0
Public Domain and Genome References
Ensembl ZC155.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84796 Hypothetical protein ZC155.5b [Caenorhabditis elegans] ref|NP_871693.1| ZC155.5b [Caenorhabditis elegans] 1.0E-141
blast AAN84795 Hypothetical protein ZC155.5a [Caenorhabditis elegans] ref|NP_498107.2| ZC155.5a [Caenorhabditis elegans] 1.0E-137
blast AAN84795 Hypothetical protein ZC155.5a [Caenorhabditis elegans] ref|NP_498107.2| ZC155.5a [Caenorhabditis elegans] 1.0E-136
blast AAN84796 Hypothetical protein ZC155.5b [Caenorhabditis elegans] ref|NP_871693.1| ZC155.5b [Caenorhabditis elegans] 1.0E-136
blast AAN84796 Hypothetical protein ZC155.5b [Caenorhabditis elegans] ref|NP_871693.1| ZC155.5b [Caenorhabditis elegans] 1.0E-134
blast AAN84795 Hypothetical protein ZC155.5a [Caenorhabditis elegans] ref|NP_498107.2| ZC155.5a [Caenorhabditis elegans] 1.0E-129
Sequence
Target Sequence 
>C. ELEGANS:181564_AT
gatacaaccaagtacgcgatgcgagtggaaagttgttggattggatcaccaaatatgtct
gtttacatattaagagatgatggatgtacaattgaaaaagcaatactaacatctccagtt
tatacatcatttaatagagctgcagcaattggatggatggctaaaatcaaacaaataaaa
aacgaacgcacccccaatcaacaacaaacccaatccgaaaaacttcctctctttttctct
gttatctctttcaaatcaacaatatttcatttcaatcttccagatatgaagtacatgcat
gtcggatgtactatccgcctgtgccacctatgtgatccaaagtgtcagacaataacagtg
agcatttcgttaaattcaattgctcatcacttttcttgtttttttcagcctccacgaacc
tgtaatgataatcgagccgatgactatgaggctatgtggaatagttcttctagagtcaag
aatttatgttttcccgagccatcgaccactgaaaatttgaatttgaattttggaaattct
cctttccaaaatgttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACAACCAAGTACGCGATGCGAG 262 423 346 Antisense
ACATCTCCAGTTTATACATCATTTA 55 107 454 Antisense
CCAATCAACAACAAACCCAATCCGA 103 249 539 Antisense
TCTTTTTCTCTGTTATCTCTTTCAA 49 617 575 Antisense
TGTCGGATGTACTATCCGCCTGTGC 56 559 645 Antisense
CCTGTGCCACCTATGTGATCCAAAG 145 267 663 Antisense
GTTAAATTCAATTGCTCATCACTTT 514 445 714 Antisense
TTCAGCCTCCACGAACCTGTAATGA 418 687 749 Antisense
AGAATTTATGTTTTCCCGAGCCATC 235 75 824 Antisense
CGAGCCATCGACCACTGAAAATTTG 594 249 840 Antisense
GAAATTCTCCTTTCCAAAATGTTGG 478 363 878 Antisense
Sequence Source Affymetrix Proprietary Database