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[181563_at]

Description C13A2.9 /REP_DB=WormBase Gene ID /WP=CE08120 /TR=O16869 /GB=AAB69880.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 0.7
(-2.8)
A 		0.8
(-2.6)
A 		0.6
(-3)
A 		3.8
(3)
A 		3
B 1.8
(3)
A 		1
(-1)
A 		0.6
(-3)
A 		1.7
(2.5)
A 		1
C 0.6
(-3)
A 		0.9
(-3)
A 		1
(-3)
A 		57.9
(3)
A 		57
avr 1
(-2.9) 		0.9
(-2.9) 		0.7
(-3) 		21.1
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.9
(-3)
A 		19.9
(-2.8)
A 		509.1
(3)
P 		310.8
(0.7)
P 		6.5
(-2.9)
A 		509
B 0.8
(-3)
A 		0.3
(-3)
A 		43.6
(-2.4)
A 		414
(3)
P 		351.3
(2.1)
P 		4.9
(-2.9)
A 		414
C 0.4
(-3)
A 		1.6
(-3)
A 		36.4
(-2.6)
A 		510.3
(3)
P 		444.2
(2.2)
P 		38.4
(-2.6)
A 		510
avr 0.6
(-3) 		0.9
(-3) 		33.3
(-2.6) 		477.8
(3) 		368.8
(1.6) 		16.6
(-2.8) 		477
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.2
(-3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.6
(3)
A 		0
B 0.6
(3)
A 		0.2
(-1.8)
A 		0.1
(-3)
A 		0.4
(0.6)
A 		1
C 0.2
(-3)
A 		0.3
(-2.9)
A 		0.4
(-2.9)
A 		9.8
(3)
A 		10
avr 0.3
(-2.8) 		0.2
(-3) 		0.2
(-3) 		3.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 0.1
(-3)
A 		0.3
(-3)
A 		4.3
(-2.8)
A 		129.1
(3)
P 		93.8
(1.4)
P 		1.6
(-2.9)
A 		129
B 0.3
(-3)
A 		0.1
(-3)
A 		10.6
(-2.6)
A 		109.6
(1.6)
P 		142.7
(3)
P 		1.8
(-2.9)
A 		143
C 0.1
(-3)
A 		0.5
(-3)
A 		9.3
(-2.6)
A 		102.6
(1.3)
P 		143.7
(3)
P 		12.8
(-2.5)
A 		144
avr 0.2
(-3) 		0.3
(-3) 		8.1
(-2.6) 		113.8
(2.4) 		126.7
(3) 		5.4
(-2.8) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12401
Sequence Type Exemplar sequence
Representative Public ID C13A2.9 NCBI
Target Description C13A2.9 /REP_DB=WormBase Gene ID /WP=CE08120 /TR=O16869 /GB=AAB69880.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072444(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072444 NCBI Caenorhabditis elegans C13A2.9 (C13A2.9) mRNA, complete cds. 11/11 None
SNAP00000044267 ENSEMBL cdna:SNAP chromosome:CEL140:V:7265178:7266525:-1 11/11 None
GENEFINDER00000044279 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7265178:7266481:-1 11/11 None
C13A2.9 ENSEMBL cdna:known chromosome:CEL140:V:7265178:7266639:-1 gene:C13A2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7265178-7266640(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13A2.9
Entrez Gene 182556 Entrez gene
SwissProt O16869 EMBL-EBI
WormBase CE08120 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69880 Hypothetical protein C13A2.9 [Caenorhabditis elegans] ref|NP_504845.1| C13A2.9 [Caenorhabditis elegans] 1.0E-179
blast AAB69880 Hypothetical protein C13A2.9 [Caenorhabditis elegans] ref|NP_504845.1| C13A2.9 [Caenorhabditis elegans] 1.0E-156
blast NP_504860 F07G11.1 [Caenorhabditis elegans] gb|AAG24050.1| Hypothetical protein F07G11.1 [Caenorhabditis elegans] 1.0E-140
blast AAB69880 Hypothetical protein C13A2.9 [Caenorhabditis elegans] ref|NP_504845.1| C13A2.9 [Caenorhabditis elegans] 1.0E-138
blast NP_504860 F07G11.1 [Caenorhabditis elegans] gb|AAG24050.1| Hypothetical protein F07G11.1 [Caenorhabditis elegans] 1.0E-135
blast NP_504860 F07G11.1 [Caenorhabditis elegans] gb|AAG24050.1| Hypothetical protein F07G11.1 [Caenorhabditis elegans] 1.0E-122
blast CAA99877 Hypothetical protein K01D12.3 [Caenorhabditis elegans] ref|NP_506101.1| K01D12.3 [Caenorhabditis elegans] 3.0E-94
blast CAA99877 Hypothetical protein K01D12.3 [Caenorhabditis elegans] ref|NP_506101.1| K01D12.3 [Caenorhabditis elegans] 4.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 5.1E-57
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 5.1E-57
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 5.1E-57
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504845.1 1 21-38
C13A2.9 1 21-38
Sequence
Target Sequence 
>C. ELEGANS:181563_AT
gagatcaaatacgtagtgtttcctaacaagaacgaactgttgacgatggtaactttagga
atcggtcacgacattaaagcagagttaaaattaaaagaattatatccaaatattgacttt
cacggatcagatccatcaaacgctattaataaagatttatatgaaaataaacttggagga
aagtattaccagtatgctgttagtggagaaaatggaatgaaaaattctcgtgtttatcgg
gagaagtataaagaagagataaccgaacacgttggagctgaatactttttgaagaatttt
atacgaaaaagcagaattgatattctctggattgatattgaaggaaatgaattttcattt
cttgatcaagtccataatggcggaactattgacaaggaaggaataaaaatatgtcagatg
aatgtagagatgcacaaagaccttttggagaaagcggacggagaaatggaaaagttccat
gattttattttcaagatgctcgaagacgggaaatacatatcaatgaagccgtactttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATCAAATACGTAGTGTTTCCTA 419 397 307 Antisense
GTGTTTCCTAACAAGAACGAACTGT 654 455 322 Antisense
AACGAACTGTTGACGATGGTAACTT 197 145 337 Antisense
GTAACTTTAGGAATCGGTCACGACA 590 355 355 Antisense
ATCGGTCACGACATTAAAGCAGAGT 351 29 367 Antisense
TGAAAAATTCTCGTGTTTATCGGGA 519 571 524 Antisense
AAGAGATAACCGAACACGTTGGAGC 399 151 560 Antisense
ACACGTTGGAGCTGAATACTTTTTG 63 111 573 Antisense
GAATTTTCATTTCTTGATCAAGTCC 439 325 655 Antisense
AGTCCATAATGGCGGAACTATTGAC 345 1 675 Antisense
ACATATCAATGAAGCCGTACTTTGT 698 105 821 Antisense
Sequence Source Affymetrix Proprietary Database